PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G25710.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 210aa MW: 21733.5 Da PI: 10.8106

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G25710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.4	3.1e-35	54	147	8	109
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskk 99 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +++ s ss+ +++ +k+ OGLUM02G25710.1 54 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVsSSAPSTSSH----------QHTlLGKR 137 5899999***************************************************999996662111122222..........22213333 PP TCP 100 sqksaasaln 109 +++++a+a + OGLUM02G25710.1 138 QRQESAAADA 147 3333332222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-31	53	138	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS AAPAEAVAQL VPAPSKKAAG AAGGKDRHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG TGTTPAAFVS 120 SSAPSTSSHQ HTLLGKRQRQ ESAAADAVSV AGAASAFWAA LPAPGRPDAW GFSPLDAQPT 180 YVPMAQAHHH HLNLLAALSG AARRAEEESR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00643	PBM	Transfer from BGIOSGA008683	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624938.1	1e-100	transcription factor TCP7
Swissprot	Q9FMX2	3e-39	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D9YVF1	1e-146	A0A0D9YVF1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GA61	1e-146	A0A0E0GA61_ORYNI; Uncharacterized protein
STRING	OGLUM02G25710.1	1e-147	(Oryza glumipatula)
STRING	ONIVA02G27620.1	1e-147	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-28	TCP family protein