PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G26320.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 431aa    MW: 45088.9 Da    PI: 8.501
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G26320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19350384135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OGLUM02G26320.1 350 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 384
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-18344398IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308344380IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-14344405No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15348382IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.83E-14349391No hitNo description
PROSITE patternPS003440350375IPR000679Zinc finger, GATA-type
PfamPF003203.0E-17350384IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTHQALIPST PPSAFSPASH FLHASSSSSS PSLSSHAVVA AAAAAMSSFA HHHHGSLVEK  60
DGRMSALRSS LRPYEAAEEM AAAAAAGGPA AAWGAVERGA GMMGDGFSVE DLLDLEELCE  120
VDRDGGEQGE AAAAAVVEKE RSSDSHGSSV VSYEPMPLLP PVMDLPAHDV EELEWVSRIM  180
DDSLAELPLP QLPAAAAALA ACGKPQHRRP HEGAASALLD PMRTPTICAL STEALVPVKS  240
RRSKRSRASV WSLSGAPLSD STSSSSTATT SSCSSSASFS PFLQYVDFPA LVASDLLDEQ  300
PRSKKSKHGK NGKQKPKKRG RKPKHQQPPH LAAAAAAGGA ALPATGDRRC SHCGVQKTPQ  360
WRAGPEGAKT LCNACGVRYK SGRLLPEYRP ACSPTFVSSL HSNSHRKVLE MRRKKETPVI  420
VAAAAPAVAS F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.10.0GATA transcription factor 6
TrEMBLA0A0D9YVM80.0A0A0D9YVM8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G26320.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5