PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G26320.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 368aa    MW: 38719.9 Da    PI: 8.4896
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G26320.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.4e-19287321135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OGLUM02G26320.2 287 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 321
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-6927360IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.308281317IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-18281335IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-14281342No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15285319IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.90E-14286328No hitNo description
PfamPF003202.5E-17287321IPR000679Zinc finger, GATA-type
PROSITE patternPS003440287312IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSALRSSLRP YEAAEEMAAA AAAGGPAAAW GAVERGAGMM GDGFSVEDLL DLEELCEVDR  60
DGGEQGEAAA AAVVEKERSS DSHGSSVVSY EPMPLLPPVM DLPAHDVEEL EWVSRIMDDS  120
LAELPLPQLP AAAAALAACG KPQHRRPHEG AASALLDPMR TPTICALSTE ALVPVKSRRS  180
KRSRASVWSL SGAPLSDSTS SSSTATTSSC SSSASFSPFL QYVDFPALVA SDLLDEQPRS  240
KKSKHGKNGK QKPKKRGRKP KHQQPPHLAA AAAAGGAALP ATGDRRCSHC GVQKTPQWRA  300
GPEGAKTLCN ACGVRYKSGR LLPEYRPACS PTFVSSLHSN SHRKVLEMRR KKETPVIVAA  360
AAPAVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.11e-178GATA transcription factor 6
TrEMBLA0A0D9YVM80.0A0A0D9YVM8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G26320.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-40GATA transcription factor 5