PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G27380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 712aa    MW: 73971.8 Da    PI: 6.3129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G27380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.11.6e-863547113374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      t++ +++ +laa+k fs++sP+l+f+++
  OGLUM02G27380.1 354 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTTPLDVALKLAAYKSFSDLSPVLQFANF 442
                      7899*************************************************6666553.....444456889******************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfefn++   
  OGLUM02G27380.1 443 TATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRRaaggVTLPLLKLTAFVSTASHHPLELHLTQDNLSQFAADLGIPFEFNAV--- 533
                      ************98899**********************99976544599****************************************8... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + 
  OGLUM02G27380.1 534 SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GI 619
                      9*********888889********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l+++++ ++v  +++       ++  Wr+ + +aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l l+W++ +Lvs+S
  OGLUM02G27380.1 620 DADSACKIERFLIQPRVHDMVLGRHKV-----HKAIAWRSVFAAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALALYWQRGELVSIS 708
                      99*******************988876.....56889********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  OGLUM02G27380.1 709 SWR 711
                      **8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.445326691IPR005202Transcription factor GRAS
PfamPF035145.6E-84354711IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPRNSTSTLS  60
SSQGGGGADS TGVAAVSESS AAAAEATKWG APGEHGGGGG GGGKEDWSSG CELPPIPGTL  120
DVGLVGGEGW DTMLGNAAAA AAGQDQSFLN WIIGAAGDLE QPGPPLLDNA GFGIPAVDPL  180
GFSLDHSLSG VASDLSSSGA HTATGGAGGG KASLGFGLFS PEATSLEQPP PPMLFHEGID  240
TKPPLLGAQP PGLLNHYHHQ PPNPAATFFM PHPSFPEHNH QSPLLQPPPK RHHSMPDDIY  300
LARNQLPPAA AAAQGLPFSP LHASVPFQLQ PSPPPTRGAM KTTAAEAAQQ QLLDELAAAA  360
KATEAGNSVG AREILARLNQ QLPPLGKPFL RSASYLREAL LLALADSHHG VSSVTTPLDV  420
ALKLAAYKSF SDLSPVLQFA NFTATQALLD EIGGTATSCI HVIDFDLGVG GQWASFLQEL  480
AHRRAAGGVT LPLLKLTAFV STASHHPLEL HLTQDNLSQF AADLGIPFEF NAVSLDAFNP  540
GELISSTGDE VVAVSLPVGC SARAPPLPAI LRLVKQLSPK IVVAIDHGAD RADLSFSQHF  600
LNCFQSCVFL LDSLDAAGID ADSACKIERF LIQPRVHDMV LGRHKVHKAI AWRSVFAAAG  660
FKPVPPSNLA EAQADCLLKR VQVRGFHVEK RGAALALYWQ RGELVSISSW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-2542771180375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLA0A0D9YW200.0A0A0D9YW20_9ORYZ; Uncharacterized protein
STRINGOGLUM02G27380.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-93GRAS family protein