PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G29200.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 419aa    MW: 44405.1 Da    PI: 6.7746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G29200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-1188182154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............................................TTS-STCHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkas.........................................kapskKlsKaeiLekAveYIks 53 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P+++                                         +a     + a+i+  A+e++k+
  OGLUM02G29200.1  88 QRMTHIAVERNRRRQMNEYLAVLRSLMPEPYvqrqtdiascqskkamseqparrtamreclaerdspamaplSAITHGGDQASIVGGAIEFVKE 181
                      79***************************76688888887777777777777777777777777777777644333336667777777777666 PP

                      H CS
              HLH  54 L 54 
                      L
  OGLUM02G29200.1 182 L 182
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-886127No hitNo description
Gene3DG3DSA:4.10.280.101.9E-1286124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1486115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.29787182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-888182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-693188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-14160200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12165187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSTLVDALCA PCSDTALIYD TFNASAAASF LFDNAAAFCD ADILGATATG EKEATSSAAA  60
AAADAAPPRK KRRRRAKSCK SREETETQRM THIAVERNRR RQMNEYLAVL RSLMPEPYVQ  120
RQTDIASCQS KKAMSEQPAR RTAMRECLAE RDSPAMAPLS AITHGGDQAS IVGGAIEFVK  180
ELEQQLQSLE AQKRTLLPHH KARCDDATPM HNASGSNVGA GGCMEPTTTT SNCSSSVTED  240
APSADAPPFA QFFAYPQYVW CHSPRDSTTT TTAASASASA SASSSSPATV AAALQSEHRS  300
GLADIEVSLV ETHASVRVMS PRRPGQLLKM IAGLQALRLT VLHLNVTTLD SLVLYTLSVK  360
VEEGCSLTTV DDIAAAVHHV LCIVDAEAAA SEHLLAAGQL ATTATAAAVA KRKLATYMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RKKRRRR
26974KKRRRR
38899RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8302940.0CT830294.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA020A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.10.0transcription factor bHLH96
TrEMBLA0A0D9YWQ30.0A0A0D9YWQ3_9ORYZ; Uncharacterized protein
STRINGOGLUM02G29200.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-49bHLH family protein