PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G30650.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 119aa MW: 13246.2 Da PI: 8.2892

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G30650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.7	1.4e-12	16	56	60	100
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la+++ e OGLUM02G30650.1 16 RLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAQGE 56 69**********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.3E-9	17	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MCSGSPCASC KLLRRRLVYE ANDRMRDPVY GCVGAISFMQ NQVSQLQMQL AVAQGEILCI 60 QMQHRDGNEN EKNLRDLGCT FSTSCGPSRS VAGQAERFGG LQFIMGRNHF WASIWPIGI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004165	2e-82	AP004165.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1479_B12.
GenBank	AP014958	2e-82	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624534.1	2e-38	LOB domain-containing protein 12
Swissprot	Q8LBW3	6e-23	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0D9YXB0	1e-83	A0A0D9YXB0_9ORYZ; Uncharacterized protein
STRING	OGLUM02G30650.1	2e-84	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-25	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]