PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G32560.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 503aa    MW: 55951.7 Da    PI: 8.7318
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G32560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP382.7e-12941351258
          E2F_TDP  12 kflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnl 58 
                      +f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe++++
  OGLUM02G32560.1  94 SFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGV 135
                      79*****9999************...**..**************986 PP
2E2F_TDP72.93.4e-23260337171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse..dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e   + +k+RR+YDi+NVL++ln i+k     ++k+++rw g
  OGLUM02G32560.1 260 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghAENTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 337
                      79***********************************9955679***********************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-1450135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-1954180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.17E-888135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.1E-1094135IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-22257338IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-29260337IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-18261337IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.99E-11262337IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MATAVVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG  60
LLCSKWGSLV HLGDSWILAF WFPVLTEFFC AFSSFVALYN RDDVESIGLD DAARRLGVER  120
RRIYDIVNVL ESVGVSSFFL RLSWTGFLFF LARFDSDICF RFICEKILVR KAKNRYSWIG  180
FGGVPMALRE LKERALREKS GLAPLPVEEP SAAIMSDDED EDKMGDADGD TESEKLSQPV  240
DNPSDNKPGA PRCRLRSDHR KEKSLGLLTQ NFVKLFLTME VDTISLDEAA KLLLGEGHAE  300
NTKVRRLYDI ANVLSSLNFI DKIQQADSRK PAFRWLGSAG KPKAENGVTI AVPPPGKTIS  360
NKRAFGTELT NIDINRSRLD STIPKKAKLT QSGGEILKNC KLSVQKQLGQ GSKGGFVYGP  420
FHPAGARKQE LDNGNKGHTD NVQNWESLAA SFRPQYQNQA LGDLFAHYVE AWKSWYSEFA  480
QGSSMMQQHF GMPVINQFLY SNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A7e-25533293228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626334.10.0E2F transcription factor-like E2FE
TrEMBLA0A0D9YY070.0A0A0D9YY07_9ORYZ; Uncharacterized protein
STRINGOGLUM02G32560.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.28e-86DP-E2F-like 1