PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G33090.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 174aa MW: 19594.6 Da PI: 12.0502

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G33090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	55.9	1.7e-17	2	72	14	83
TCP 14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 ++g+RdRR+Rls++ + f+d+qd+LG+ ++sk ieWL+ +a a l + +a + ++s + s++ OGLUM02G33090.1 2 SRGLRDRRIRLSVPMSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGRPSEE 72 689************************************99988888777776666633333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.249	1	50	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.1E-15	2	43	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSRGLRDRRI RLSVPMSIAF YDIQDRLGVN RPSKSIEWLI CAALVARLLL RPPQRRPAPH 60 PRRPSSGRPS EEQARMRKAT VAAPPGKWGE KRRKTRSWCA ARKAERIAKL RVWREGWMPR 120 REASTSAALG GQSWIRKPST PGSGDSCSCS DAKTAKRRWA EKVGEVVARE AGSE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005733	0.0	AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBank	AP005848	0.0	AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619107.1	5e-33	transcription factor PCF8-like
TrEMBL	A0A0D9YY79	1e-117	A0A0D9YY79_9ORYZ; Uncharacterized protein
STRING	OGLUM02G33090.1	1e-118	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19965	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	9e-15	TCP family protein