 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM02G35650.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NF-YA |
| Protein Properties |
Length: 163aa MW: 17585.4 Da PI: 11.0822 |
| Description |
NF-YA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM02G35650.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CBFB_NFYA | 40.6 | 8.3e-13 | 23 | 46 | 35 | 58 |
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58
pylheSRh+hA++R+Rg+gGrF
OGLUM02G35650.1 23 SVPYLHESRHRHAMKRARGTGGRF 46
579********************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MACISYPYND SGSGVWASYS SRSVPYLHES RHRHAMKRAR GTGGRFLNTK QLQLQQQSHT 60
TSTKTTTDSQ NSSGSVHLRL GGGAIGDQTP FPFKAMDSQA NIKRAAASAS TFTVTSAAQK 120
DDAFFDRHGH HLSSFSGHFG QASAQGGVGR MHNGSQQRVP AMR
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 30 | 39 | RHRHAMKRAR |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005538 | 0.0 | AP005538.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0013K01. |
| GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
