PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G37030.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 441aa MW: 44257 Da PI: 5.7964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G37030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	223	268	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OGLUM02G37030.1 223 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 268 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-17	216	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	220	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.96E-13	222	272	No hit	No description
Pfam	PF00010	3.0E-9	223	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	224	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MQPNARQMHG GGGGGGGGGQ DDFFDQMLST LPAVWSELGS GKPAWDLTAG AVGGGGGASD 60 DHSAAAFDDS ALLASRLRQH QIDGGGDKPI MLQLSDLHRH HGLAAGDDSG GAAGFLPLSL 120 FADRSQDDID AAFKSPNGAR GDHALYNGFG AAGMHGAAAM QPPPFGQGGS MPAQSFGGGA 180 AASGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA 240 LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSESNGNG 300 NATSSSGNGE AANGSSNGDN NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL 360 ATAISSATTS SLLPRTGGGA GGSLHEGGNG TSPPLVNGAA TGCDDAGVFF SVKFVVELSF 420 LLLNEDCRGK EESKLLVQKG P

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MQPNARQMHG GGGGGGGGGQ DDFFDQMLST LPAVWSELGS GKPAWDLTAG AVGGGGGASD  60
DHSAAAFDDS ALLASRLRQH QIDGGGDKPI MLQLSDLHRH HGLAAGDDSG GAAGFLPLSL  120
FADRSQDDID AAFKSPNGAR GDHALYNGFG AAGMHGAAAM QPPPFGQGGS MPAQSFGGGA  180
AASGGGGGSA SAAAAAGASS GGGAAAPPRQ RQRARRGQAT DPHSIAERLR RERIAERMKA  240
LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSESNGNG  300
NATSSSGNGE AANGSSNGDN NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL  360
ATAISSATTS SLLPRTGGGA GGSLHEGGNG TSPPLVNGAA TGCDDAGVFF SVKFVVELSF  420
LLLNEDCRGK EESKLLVQKG P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003975	0.0	AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBank	AP004094	0.0	AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627343.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	2e-77	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D9YZM2	0.0	A0A0D9YZM2_9ORYZ; Uncharacterized protein
STRING	OGLUM02G37030.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-40	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]