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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OGLUM03G00280.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 470aa MW: 51018 Da PI: 6.841 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM03G00280.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 250.7 | 5.6e-77 | 104 | 469 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLar..lsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
ve+L+++A+ ++gd +a+++Lar ++ + ++++ p+ R a yf+ AL++ l++ v+ +++ p+ + + + +l+a+k+fs++sP+l
OGLUM03G00280.1 104 VEQLVQAAKLTEAGDVLAARHILARpaINYRlPASAAPPLLRSALYFKDALRRALNSDVDDDSSSTPTPPLH--DLLLKLTAYKAFSDLSPLLH 195
689*********************85466656777889*******************888888877777776..69999*************** PP
GRAS 93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
f+h+t+ qa+l++++ + +++H +Dfdi+ G QW++L++ La R + l++T+++ +s+ + el+ +++ L+ fA+ l vpf+f +
OGLUM03G00280.1 196 FAHFTCVQAVLDELAPSascSCIHLLDFDIGVGEQWASLMHDLAHRH-PGVALKVTALNVTASSshhHPLELQLIHDTLSTFAADLSVPFRFAA 288
*************987766799************************6.44799***99886666667999************************ PP
GRAS 181 lvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+ +l++ +l L +v +a+aV+l + + + ++vL+lv++l +++vv v++ +d+++ +F++++l+al+ ++l++sl+
OGLUM03G00280.1 289 F---NLDATDLTPLlAVAAaTDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGARLVVSVDRRCDRGELPFAAHLLQALRSTVSLLESLD 371
7...5555555554255557*********9888887....4....456*********************************************9 PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
a +++s+ +k+Er++++++i+++v ++ +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +
OGLUM03G00280.1 372 AM-GTDSDVVAKIERFWVQPKIQECVRAAVGG---DKTAASAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRGGSLFLHWQRGE 461
98.99*********************988776...688899***************************************************** PP
GRAS 367 LvsvSaWr 374
L s+SaWr
OGLUM03G00280.1 462 LASISAWR 469
*******8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MLGEERRKAS SSFTLTSPGL RPPTHAASTP PPWLVDADHH HDNTFLHWVI NDHHHPLLDL 60 DDVDLDYTKP APSFFADRGL HHHHPASSSF PSPKPTADDN TSTVEQLVQA AKLTEAGDVL 120 AARHILARPA INYRLPASAA PPLLRSALYF KDALRRALNS DVDDDSSSTP TPPLHDLLLK 180 LTAYKAFSDL SPLLHFAHFT CVQAVLDELA PSASCSCIHL LDFDIGVGEQ WASLMHDLAH 240 RHPGVALKVT ALNVTASSSH HHPLELQLIH DTLSTFAADL SVPFRFAAFN LDATDLTPLL 300 AVAAATDAIA VHLPVGSVHA TAVPSVLHLV RRLGARLVVS VDRRCDRGEL PFAAHLLQAL 360 RSTVSLLESL DAMGTDSDVV AKIERFWVQP KIQECVRAAV GGDKTAASAW RATLASAGFV 420 PVQVSSMAEA QAESLLKKLP VRGFRLERRG GSLFLHWQRG ELASISAWRC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213908 | 0.0 | AC213908.1 Oryza glaberrima clone OG_BBa0062I05, complete sequence. |