PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G00280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 470aa    MW: 51018 Da    PI: 6.841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G00280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.75.6e-771044692374
             GRAS   2 velLlecAeavssgdlelaqalLar..lsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      ve+L+++A+  ++gd  +a+++Lar  ++ +  ++++ p+ R a yf+ AL++ l++ v+  +++ p+ + +  +   +l+a+k+fs++sP+l 
  OGLUM03G00280.1 104 VEQLVQAAKLTEAGDVLAARHILARpaINYRlPASAAPPLLRSALYFKDALRRALNSDVDDDSSSTPTPPLH--DLLLKLTAYKAFSDLSPLLH 195
                      689*********************85466656777889*******************888888877777776..69999*************** PP

             GRAS  93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
                      f+h+t+ qa+l++++ +   +++H +Dfdi+ G QW++L++ La R  +   l++T+++  +s+   +  el+ +++ L+ fA+ l vpf+f +
  OGLUM03G00280.1 196 FAHFTCVQAVLDELAPSascSCIHLLDFDIGVGEQWASLMHDLAHRH-PGVALKVTALNVTASSshhHPLELQLIHDTLSTFAADLSVPFRFAA 288
                      *************987766799************************6.44799***99886666667999************************ PP

             GRAS 181 lvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                      +   +l++ +l  L +v    +a+aV+l +   +      +     ++vL+lv++l +++vv v++ +d+++ +F++++l+al+  ++l++sl+
  OGLUM03G00280.1 289 F---NLDATDLTPLlAVAAaTDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGARLVVSVDRRCDRGELPFAAHLLQALRSTVSLLESLD 371
                      7...5555555554255557*********9888887....4....456*********************************************9 PP

             GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                      a  +++s+  +k+Er++++++i+++v ++      +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +
  OGLUM03G00280.1 372 AM-GTDSDVVAKIERFWVQPKIQECVRAAVGG---DKTAASAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRGGSLFLHWQRGE 461
                      98.99*********************988776...688899***************************************************** PP

             GRAS 367 LvsvSaWr 374
                      L s+SaWr
  OGLUM03G00280.1 462 LASISAWR 469
                      *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.72877449IPR005202Transcription factor GRAS
PfamPF035141.9E-74104469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLGEERRKAS SSFTLTSPGL RPPTHAASTP PPWLVDADHH HDNTFLHWVI NDHHHPLLDL  60
DDVDLDYTKP APSFFADRGL HHHHPASSSF PSPKPTADDN TSTVEQLVQA AKLTEAGDVL  120
AARHILARPA INYRLPASAA PPLLRSALYF KDALRRALNS DVDDDSSSTP TPPLHDLLLK  180
LTAYKAFSDL SPLLHFAHFT CVQAVLDELA PSASCSCIHL LDFDIGVGEQ WASLMHDLAH  240
RHPGVALKVT ALNVTASSSH HHPLELQLIH DTLSTFAADL SVPFRFAAFN LDATDLTPLL  300
AVAAATDAIA VHLPVGSVHA TAVPSVLHLV RRLGARLVVS VDRRCDRGEL PFAAHLLQAL  360
RSTVSLLESL DAMGTDSDVV AKIERFWVQP KIQECVRAAV GGDKTAASAW RATLASAGFV  420
PVQVSSMAEA QAESLLKKLP VRGFRLERRG GSLFLHWQRG ELASISAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2513946936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139080.0AC213908.1 Oryza glaberrima clone OG_BBa0062I05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629082.20.0scarecrow-like protein 6
TrEMBLA0A0D9Z0U80.0A0A0D9Z0U8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G00280.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-56GRAS family protein