PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G03680.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 706aa    MW: 75306.6 Da    PI: 5.9612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G03680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05595620123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+  +C ++F+++ +L +H ++ +
  OGLUM03G03680.1 595 FQCEidYCRMTFKNRAELSVHKKNtC 620
                      89*******************99866 PP
2zf-C2H212.30.00053620642323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cg++F+++ +L+rH++ H
  OGLUM03G03680.1 620 CTvkSCGRHFRSHKYLRRHQSIH 642
                      88889***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516595617IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009618647IPR007087Zinc finger, C2H2
SMARTSM003550.42618642IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4619642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280620642IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-9634676No hitNo description
Gene3DG3DSA:3.30.160.606.8E-10643669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887648677IPR007087Zinc finger, C2H2
SMARTSM003550.04648672IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280650672IPR007087Zinc finger, C2H2
SuperFamilySSF576677.64E-7667701No hitNo description
Gene3DG3DSA:3.30.160.602.8E-7670700IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035539678700IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDHTTKKAEA EAEARGGTRG GHQKIPPSPR RGEAKRSSPP KFPNPPPLPP PPPCASAATP  60
RASSPPPPPP PPPPSRRPXX PAASAAWCHA AADDCAICDL TRSASPQVVA PDAIKQKGHI  120
AGRAPEPELR SDPRVGLAER TPVPEDQGRD IDDGPPAKRS LTFTDAAARL EGSGNVGAGV  180
ATEPAARVGA PVANGAVSGQ EDRAATCLAD ESAAELIATR VTSLVTGATA EPEVLKGASF  240
ANTNVTEPRV SERVPLVREA ATEPEDEVSM REVTEGALPD GEGAAKLEIT GGLSRESADK  300
MEVTKGISLV TEASADSELA QRVPTEPGVE LSLPEVTERV PVVTEDFTEL GDTFSGLHIT  360
GFASLDNEGS VEQEVTGSGS LVNEATEMEV KEGTCIFTRV ATELGDTGRV SACSGDGDIA  420
LDEPRPPDCV SEVANVNVGN AGEAVASKVQ PFRDNAESVG GSINSTGNGH VSSKSPTADE  480
AAPPGGCTDT PSVSCLSDIV ARSIGKSGRT DIICYVRRRG KRKLEMVEVK EENVEMDDSA  540
ICDQYDDKVA SERTGPCESV TSTAVSVEIK IADIKRELED NSTASKGKKK RAKRFQCEID  600
YCRMTFKNRA ELSVHKKNTC TVKSCGRHFR SHKYLRRHQS IHNDDMPYKC PWEGCSMAFK  660
WSWDRGEHFQ VHAGKRPYKC TTPGCSKIYK FVSDFTRHKR RCKPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-4259570123129Lysine-specific demethylase REF6
6a58_A3e-4259570123129Lysine-specific demethylase REF6
6a59_A3e-4259570123129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1516522RRRGKRK
2516523RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0D9Z2350.0A0A0D9Z235_9ORYZ; Uncharacterized protein
STRINGOGLUM03G03680.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-40relative of early flowering 6