PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06050.4
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 295aa    MW: 33100.2 Da    PI: 8.9982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06050.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19115165155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OGLUM03G06050.4 115 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 165
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.51E-28115173No hitNo description
PfamPF008471.3E-12115165IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21115174IPR016177DNA-binding domain
SMARTSM003802.0E-32116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-28116173IPR001471AP2/ERF domain
PROSITE profilePS5103221.97116173IPR001471AP2/ERF domain
PRINTSPR003671.7E-7117128IPR001471AP2/ERF domain
PRINTSPR003671.7E-7139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGDVSPGERR ARRAMCGGAI LADFTPARVP RRLTAAELLP VTPTPPAAER RTTRKRKSDV  60
DFEAEFELFE DDDDDDEFEL SDDGDEISSD VSSSSRPRRR VAAAAAGRRK ASKKSKYRGV  120
RRRPSGRFAA EIRDPKKGRR VWLGTYGSAE EAAMAYDREA RRIRGKGARL NFPRDGDGSP  180
RRSNDRPCWT IDLNLPAAAV SDQEALSAAK CKIKQCPRDE QMASATPELM EEDASSSRNM  240
VPLSMALQLQ YAAMIAECDR EMEEIAAVER DLERRRRQVF ERRGHLVRQA SLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19112173163ATERF1
3gcc_A1e-19112173163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257TRKRKS
2108123RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0796330.0AC079633.9 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence.
GenBankAK0731330.0AK073133.1 Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3234780.0AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.11e-147ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0D9Z3080.0A0A0D9Z308_9ORYZ; Uncharacterized protein
STRINGOGLUM03G06050.11e-158(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.17e-25ERF family protein