PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06680.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1021aa    MW: 114416 Da    PI: 5.6628
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.72.9e-55201363118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq
  OGLUM03G06680.1  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113
                      55599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Lee++ +ivlvhylevk
  OGLUM03G06680.1 114 RRSYWMLEEDYMHIVLVHYLEVK 136
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.72715141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.1E-7432517IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.56E-17434519IPR014756Immunoglobulin E-set
PfamPF018335.5E-8434509IPR002909IPT domain
CDDcd001020.00341434521No hitNo description
SuperFamilySSF484031.04E-16623727IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-18625731IPR020683Ankyrin repeat-containing domain
CDDcd002042.09E-13626724No hitNo description
PROSITE profilePS500888.763632664IPR002110Ankyrin repeat
PROSITE profilePS5029718.059632736IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013665694IPR002110Ankyrin repeat
PROSITE profilePS500888.843665697IPR002110Ankyrin repeat
SMARTSM002481400704733IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8836889IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407839868IPR000048IQ motif, EF-hand binding site
PfamPF006120.0033840859IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578862886IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4864883IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKAGKL SSRSTGHDDV LQASHADSPL SQLPSQTTEG ESSVSGQASE  180
YDETESAYLK QNSVQQIFIR EEPDTTLSLG CGSMKMEVDL YQGLQATAPN TGFYSHGQDN  240
LPVVLNESDL GTAFNGPNSQ FDLSLWIEAM KPDKGTHQIP LYQAPVPSEQ SPFTGGPGIE  300
SFTFDEVYNN GLSIRDVDGD DTDGETPWQI PNASGTFATV DSFQQNDKTL EEAINYPLLK  360
TQSSSLSDII KDSFKKNDSF TRWMSKELAE VDDSQITSSS GVYWNSEEAD NIIEASSSDQ  420
YTLGPVLAQD QLFTIVDFSP TWTYAGSKTR VFIKGNFLSS DEVKRLKWSC MFGEFEVPAE  480
IIADDTLVCH SPSHKPGRVP FYVTCSNRLA CSEVREFDFR PQYMDAPSPL GSTNKIYLQK  540
RLDKLLSVEQ DEIQTTLSNP TKEIIDLSKK ISSLMMNNDD WSELLKLADD NEPATDDKQD  600
QFLQNRIKEK LHIWLLHKVG DGGKGPSVLD EEGQGVLHLA AALGYDWAIR PTIAAGVNIN  660
FRDAHGWTAL HWAAFCGRER TVVALIALGA APGAVTDPTP SFPSGSTPAD LASANGHKGI  720
SGFLAESSLT SHLQTLNLKE AMRSSAGEIS GLPGIVNVAD RSASPLAVEG HQTGSMGDSL  780
GAVRNAAQAA ARIYQVFRMQ SFQRKQAVQY EDENGAISDE RAMSLLSAKP SKPAQLDPLH  840
AAATRIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVRK HYRKIIWSVG IVEKVILRWR  900
RRGAGLRGFR PTENAVTEST SSSSGNVTQN RPAENDYDFL QEGRKQTEER LQKALARVKS  960
MVQYPDARDQ YQRILTVVTK MQESQAMQEK MLEESTEMDE GLLMSEFKEL WDDDMPTPGY  1020
F
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631248.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0D9Z3930.0A0A0D9Z393_9ORYZ; Uncharacterized protein
STRINGOGLUM03G06680.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains