PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G06680.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 961aa MW: 108109 Da PI: 6.0014

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G06680.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.8	2.7e-55	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +fq OGLUM03G06680.2 20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENINFQ 113 55599*************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+yw+Lee++ +ivlvhylevk OGLUM03G06680.2 114 RRSYWMLEEDYMHIVLVHYLEVK 136 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.6	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.2E-76	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-48	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	4.7E-7	372	457	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	5.1E-8	374	449	IPR002909	IPT domain
SuperFamily	SSF81296	1.43E-17	374	459	IPR014756	Immunoglobulin E-set
CDD	cd00102	0.00319	374	461	No hit	No description
SuperFamily	SSF48403	8.86E-17	552	666	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.2E-18	565	671	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.92E-13	566	664	No hit	No description
PROSITE profile	PS50297	18.059	572	676	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.763	572	604	IPR002110	Ankyrin repeat
SMART	SM00248	0.013	605	634	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.843	605	637	IPR002110	Ankyrin repeat
SMART	SM00248	1400	644	673	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.51E-8	776	829	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.075	778	800	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	779	808	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0031	780	799	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	801	823	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.578	802	826	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.9E-4	804	823	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML 120 EEDYMHIVLV HYLEVKIFIR EEPDTTLSLG CGSMKMEVDL YQGLQATAPN TGFYSHGQDN 180 LPVVLNESDL GTAFNGPNSQ FDLSLWIEAM KPDKGTHQIP LYQAPVPSEQ SPFTGGPGIE 240 SFTFDEVYNN GLSIRDVDGD DTDGETPWQI PNASGTFATV DSFQQNDKTL EEAINYPLLK 300 TQSSSLSDII KDSFKKNDSF TRWMSKELAE VDDSQITSSS GVYWNSEEAD NIIEASSSDQ 360 YTLGPVLAQD QLFTIVDFSP TWTYAGSKTR VFIKGNFLSS DEVKRLKWSC MFGEFEVPAE 420 IIADDTLVCH SPSHKPGRVP FYVTCSNRLA CSEVREFDFR PQYMDAPSPL GSTNKIYLQK 480 RLDKLLSVEQ DEIQTTLSNP TKEIIDLSKK ISSLMMNNDD WSELLKLADD NEPATDDKQD 540 QFLQNRIKEK LHIWLLHKVG DGGKGPSVLD EEGQGVLHLA AALGYDWAIR PTIAAGVNIN 600 FRDAHGWTAL HWAAFCGRER TVVALIALGA APGAVTDPTP SFPSGSTPAD LASANGHKGI 660 SGFLAESSLT SHLQTLNLKE AMRSSAGEIS GLPGIVNVAD RSASPLAVEG HQTGSMGDSL 720 GAVRNAAQAA ARIYQVFRMQ SFQRKQAVQY EDENGAISDE RAMSLLSAKP SKPAQLDPLH 780 AAATRIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVRK HYRKIIWSVG IVEKVILRWR 840 RRGAGLRGFR PTENAVTEST SSSSGNVTQN RPAENDYDFL QEGRKQTEER LQKALARVKS 900 MVQYPDARDQ YQRILTVVTK MQESQAMQEK MLEESTEMDE GLLMSEFKEL WDDDMPTPGY 960 F

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKIFIR EEPDTTLSLG CGSMKMEVDL YQGLQATAPN TGFYSHGQDN  180
LPVVLNESDL GTAFNGPNSQ FDLSLWIEAM KPDKGTHQIP LYQAPVPSEQ SPFTGGPGIE  240
SFTFDEVYNN GLSIRDVDGD DTDGETPWQI PNASGTFATV DSFQQNDKTL EEAINYPLLK  300
TQSSSLSDII KDSFKKNDSF TRWMSKELAE VDDSQITSSS GVYWNSEEAD NIIEASSSDQ  360
YTLGPVLAQD QLFTIVDFSP TWTYAGSKTR VFIKGNFLSS DEVKRLKWSC MFGEFEVPAE  420
IIADDTLVCH SPSHKPGRVP FYVTCSNRLA CSEVREFDFR PQYMDAPSPL GSTNKIYLQK  480
RLDKLLSVEQ DEIQTTLSNP TKEIIDLSKK ISSLMMNNDD WSELLKLADD NEPATDDKQD  540
QFLQNRIKEK LHIWLLHKVG DGGKGPSVLD EEGQGVLHLA AALGYDWAIR PTIAAGVNIN  600
FRDAHGWTAL HWAAFCGRER TVVALIALGA APGAVTDPTP SFPSGSTPAD LASANGHKGI  660
SGFLAESSLT SHLQTLNLKE AMRSSAGEIS GLPGIVNVAD RSASPLAVEG HQTGSMGDSL  720
GAVRNAAQAA ARIYQVFRMQ SFQRKQAVQY EDENGAISDE RAMSLLSAKP SKPAQLDPLH  780
AAATRIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVRK HYRKIIWSVG IVEKVILRWR  840
RRGAGLRGFR PTENAVTEST SSSSGNVTQN RPAENDYDFL QEGRKQTEER LQKALARVKS  900
MVQYPDARDQ YQRILTVVTK MQESQAMQEK MLEESTEMDE GLLMSEFKEL WDDDMPTPGY  960
F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066651	0.0	AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631250.1	0.0	calmodulin-binding transcription activator 2 isoform X3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A0D9Z394	0.0	A0A0D9Z394_9ORYZ; Uncharacterized protein
STRING	OGLUM03G06680.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]