PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 74aa    MW: 7916.98 Da    PI: 8.103
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP34.85.7e-113474545
              TCP  5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45
                     k ++++ h+kv+  + R+R+ +   a +F+L +eLG+++d+
  OGLUM03G06890.1 34 KPPSKDCHSKVDTLGCRIRMHIIYTAHIFQLNRELGHKSDG 74
                     8899***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513699.3023774IPR017887Transcription factor TCP subgroup
PfamPF036347.9E-83774IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MTKVHGDGGG GAALDKQLVP DASNDNGTAF AICKPPSKDC HSKVDTLGCR IRMHIIYTAH  60
IFQLNRELGH KSDG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2104803e-95AC210480.2 Oryza glaberrima clone OG_BBa0067M08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629543.11e-22transcription factor TCP21
SwissprotQ9FTA22e-14TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0D9Z3C05e-48A0A0D9Z3C0_9ORYZ; Uncharacterized protein
STRINGOGLUM03G06890.18e-49(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3818033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.17e-17TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]