PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09050.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 139aa MW: 16126.6 Da PI: 4.9805

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	71.2	2.7e-22	42	136	2	89
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + GfrF Pt+e l+++yL++k++g + ++e vi+ +diy+++P +L + + +e + w++F++r++++ +g r++ +t sgyWka g+ OGLUM03G09050.1 42 ALGFRFYPTEEKLICFYLRNKLDGLRDDIECVIPIFDIYSIDPLQLSEihhemlgSSGEEGEPWFYFCPRQEREVRGGRPSWTTPSGYWKAVGT 135 67**********************999888**********85456655433336669**************************997 PP NAM 89 d 89 OGLUM03G09050.1 136 P 136 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-25	31	138	IPR003441	NAC domain
PROSITE profile	PS51005	26.24	41	139	IPR003441	NAC domain
Pfam	PF02365	3.2E-12	44	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MAKRKEWLTT TRLTMHMVVQ QDWIEVCPMD ELGPAMLGLR LALGFRFYPT EEKLICFYLR 60 NKLDGLRDDI ECVIPIFDIY SIDPLQLSEI HHEMLGSSGE EGEPWFYFCP RQEREVRGGR 120 PSWTTPSGYW KAVGTPGVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-13	39	139	18	110	NAC domain-containing protein 19
3swm_B	6e-13	39	139	18	110	NAC domain-containing protein 19
3swm_C	6e-13	39	139	18	110	NAC domain-containing protein 19
3swm_D	6e-13	39	139	18	110	NAC domain-containing protein 19
3swp_A	6e-13	39	139	18	110	NAC domain-containing protein 19
3swp_B	6e-13	39	139	18	110	NAC domain-containing protein 19
3swp_C	6e-13	39	139	18	110	NAC domain-containing protein 19
3swp_D	6e-13	39	139	18	110	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-125	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	4e-54	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	1e-30	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9Z458	4e-99	A0A0D9Z458_9ORYZ; Uncharacterized protein
STRING	OGLUM03G09050.1	1e-100	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-33	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]