PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G09110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 404aa    MW: 45034.3 Da    PI: 5.0466
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G09110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.7e-32491402103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw e g sfv++d++ f++  L+++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+ll+
  OGLUM03G09110.1  49 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLLK 132
                      9************************************.8**************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr+k++
  OGLUM03G09110.1 133 TIKRRKKS 140
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3341132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.81E-3045137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5045137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-2849137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-164972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-168698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-1699111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGSKKRSPQH PAAAAPPPAV GGGGEVSGDG GASTANGPVV PKPSEVAPFL TKVYDMVSDP  60
ATDNVISWAE GGGSFVIWDS HAFERDLHRH FKHSNFTSFI RQLNTYGFRK VHPDRWEWAN  120
EGFIMGQKHL LKTIKRRKKS SQEAPSEIQK APVKTAPGTE NIEIGKYGGL EKEVETLKRD  180
KALLMQQLVD LRHYQQTSNL EVQNLIERLQ VMEQNQQQMM ALLAIVVQNP SFLNQLVQQQ  240
QQQRRSNWWS PDGSKKRRFH ALEQGPVTDQ ETSGRGAHIV EYLPPVPETS GQVNPVEGAI  300
CSANSQPVPS PAVATPMDMQ TSNVADTLGS SEEPFTDNST LHEWDDNDMQ LLFDDNLDPI  360
LPPFENDGQM GPPLSVQDYD FPQLEQDCLM EAQYNSNNPQ YVLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-223013710129Heat shock factor protein 1
5d5v_B4e-223013710129Heat shock factor protein 1
5d5v_D4e-223013710129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444900.0AY344490.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633341.10.0heat stress transcription factor A-9
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A0D9Z4660.0A0A0D9Z466_9ORYZ; Uncharacterized protein
STRINGOGLUM03G09110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-72heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]