PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G09410.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 329aa    MW: 35882.3 Da    PI: 5.2641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G09410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11145192355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  OGLUM03G09410.1 145 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 192
                      5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14146207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15146205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-10147196No hitNo description
SMARTSM003533.2E-11148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDEQNQWLTE PEPEELTYMY HQEEHARMQE QFAGTPLVEQ PVRFDQFYPA SMAPNQFHAS  60
HCSSFPAFGG SSALPSLAFG AVATTKKEQV QQPSPSSSNV LSFAGQVQGS TTTLDFSGRG  120
WQQDDGVGVF QQPPERRSRP PANAQEHVIA ERKRREKLQQ QFVALATIVP GLKKTDKISL  180
LGSTIDYVKQ LEEKVKALEE GSRRTAEPTT AFESKCRITV DDDDGGSASS GTDDGSSSSS  240
SPTVEASIHG STVLLKICCK ERRGLLVMIL SELEKQGLSI INTSVVPFTD SCLNITITAK  300
ARLALPIEEG FSTAVELVKN LTVAVRGFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997320.0AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAK2881570.0AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880159.10.0transcription factor bHLH18
TrEMBLA0A0D9Z4A80.0A0A0D9Z4A8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G09410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-31bHLH family protein