PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G09850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 238aa    MW: 25119.6 Da    PI: 10.8362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G09850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-172872348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      W++eEd+ll ++v++ Gg++W  Ia  ++ gRt+k+c++rw+++l
  OGLUM03G09850.1 28 GWSKEEDKLLRELVRKQGGKDWGVIATAFP-GRTDKSCRLRWRQHL 72
                     5*****************************.************996 PP
2Myb_DNA-binding49.41e-1580124248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +++++ Ed ++v++++ +G++ W+tIa+ ++ gR+++ +k+rw+++l
  OGLUM03G09850.1  80 LPFSAGEDRKIVELHRVHGNR-WATIAAFLP-GRSDNAIKNRWNTHL 124
                      589999***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.3352176IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-192575IPR009057Homeodomain-like
SuperFamilySSF466891.54E-2925120IPR009057Homeodomain-like
SMARTSM007176.7E-172574IPR001005SANT/Myb domain
PfamPF002491.7E-162872IPR001005SANT/Myb domain
CDDcd001677.04E-162972No hitNo description
SMARTSM007174.9E-1378126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2181125IPR009057Homeodomain-like
PROSITE profilePS5129419.00681128IPR017930Myb domain
CDDcd001675.74E-1281124No hitNo description
PfamPF002499.0E-1481124IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MALEGAAGGG GVGGGGGPPG QEAGKKVGWS KEEDKLLREL VRKQGGKDWG VIATAFPGRT  60
DKSCRLRWRQ HLDPSVDVAL PFSAGEDRKI VELHRVHGNR WATIAAFLPG RSDNAIKNRW  120
NTHLRKRHAQ DVQQRPSGGL ALGLGGGGGA GQAAGGKLTP VCLQLFPPTQ APPMGRTYRG  180
RQEALCRSSS SSSPWLPDNA SAAAAMDVGN EAVRALPELR LSPAAVVFDA MPLQAIRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-292912710107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1376960.0AC137696.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630256.11e-121transcription factor MYB1
TrEMBLA0A0D9Z4G31e-170A0A0D9Z4G3_9ORYZ; Uncharacterized protein
STRINGOGLUM03G09850.11e-171(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.14e-34myb domain protein 109