PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G12370.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 399aa MW: 40372.6 Da PI: 9.4709

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G12370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.8e-39	87	146	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s OGLUM03G12370.1 87 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRS 146 67899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-36	71	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-33	90	145	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.758	91	145	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	93	129	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAAAAAPDEI GGLPTSSSSA 60 SAAAAAVQQA RPNSMAERAR LARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKT 120 CRRYWTRGGS LRNVPVGGGC RRNKRSGKSS SSAAAGASSS SSKPSSSAAR QLPGGGASPM 180 PSAAASTQPG GAAAGAIIPP SGLSSMSHHL PFLGAMHPPG SNLGLTFSAG FQPLGGMHHH 240 VDTADQFPVA SGGGATIGAS LEQWRVQQQP QQHQFPFLGG ALELPPPPPM YQLGLEATRA 300 AGTGATAAAA FTLGQTSATA TTSRQEGSMK LEDSKGLEMS LQRQYMAALR QGDGVWGNNN 360 GGNGGSDGGG NGGGGSWTMN FPGFHSSSGG GGDDGGGVL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAAAAAPDEI GGLPTSSSSA  60
SAAAAAVQQA RPNSMAERAR LARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKT  120
CRRYWTRGGS LRNVPVGGGC RRNKRSGKSS SSAAAGASSS SSKPSSSAAR QLPGGGASPM  180
PSAAASTQPG GAAAGAIIPP SGLSSMSHHL PFLGAMHPPG SNLGLTFSAG FQPLGGMHHH  240
VDTADQFPVA SGGGATIGAS LEQWRVQQQP QQHQFPFLGG ALELPPPPPM YQLGLEATRA  300
AGTGATAAAA FTLGQTSATA TTSRQEGSMK LEDSKGLEMS LQRQYMAALR QGDGVWGNNN  360
GGNGGSDGGG NGGGGSWTMN FPGFHSSSGG GGDDGGGVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083942	0.0	AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBank	AC137698	0.0	AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629100.1	0.0	dof zinc finger protein DOF3.6 isoform X1
TrEMBL	A0A0D9Z5C4	0.0	A0A0D9Z5C4_9ORYZ; Uncharacterized protein
STRING	OGLUM03G12370.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	7e-44	OBF-binding protein 3