PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G13820.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 217aa    MW: 24107.4 Da    PI: 10.0222
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G13820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.78.1e-1021103284
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                      W++ e+ aLi+a   ++ + +rg l +++W++ ++++      + r  +r+  qC+ + + l+ ryk++ +          s +++f++
  OGLUM03G13820.1  21 WSDGETAALIDAWGPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 103
                      ***************************************999888889*******************98665553......24555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-1719106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSSSKPSPQQ QQQQQRANEW WSDGETAALI DAWGPLHVAR SRGPLPAKDW RAAASAVNAR  60
RAAAGRRHNR TRAQCRARVQ TLKERYKREL AKPPPSGWRH FSRLQEFLLA GPPPGFPPKT  120
MPPASVKKEE EEEEECQDEA VGGGGGSGGL LGRWVVPTRP RNGAAAWCPV GVVVTKLAEV  180
YERVELARLE VEKEKVAMEM EKAMQEAVKL KEEKLDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131300.0AC213130.1 Oryza glaberrima clone OG_BBa0027N13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880270.11e-115uncharacterized protein LOC4332524
TrEMBLA0A0D9Z5V71e-154A0A0D9Z5V7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G13820.11e-155(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.29e-08sequence-specific DNA binding transcription factors