PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G16500.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 409aa    MW: 44386.1 Da    PI: 8.3686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G16500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-115982326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  OGLUM03G16500.2 59 EPDCSYYMRTGLCRFGMTCKFNHP 82
                     789********************8 PP
2zf-CCCH38.91.4e-12104128327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OGLUM03G16500.2 104 QPECQYYLKTGTCKFGATCKFHHPR 128
                      799********************96 PP
3zf-CCCH18.43.9e-06150166319
                      S---SGGGGTS--TTTT CS
          zf-CCCH   3 telCrffartGtCkyGd 19 
                      +++C +++rtG+Ck+G+
  OGLUM03G16500.2 150 EKECAYYLRTGQCKFGS 166
                      679*************8 PP
4zf-CCCH39.78.2e-13276301227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OGLUM03G16500.2 276 DQPECQFYMKTGDCKFGAVCKFHHPK 301
                      689*********************96 PP
5zf-CCCH38.51.9e-12321347127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OGLUM03G16500.2 321 PGEPICTFYSRYGICKFGPNCKFDHPM 347
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8685684IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-45683IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-85982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-56184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-46283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244101129IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6104130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5107129IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.127147166IPR000571Zinc finger, CCCH-type
SMARTSM0035642147168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511274302IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5274301IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5277302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4280301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6318346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178320348IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7320347IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10322347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4325345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTWAV TNWPLSRSAS  180
FIASPRWPGH SSYAQVIVPP GLVQVPGWNP YAAQIGSSSS DDQQRTAGGA QYYTGSRHSE  240
TPNMGDQGMF SSYQAGSVPL GLYTVQRESI FPERPDQPEC QFYMKTGDCK FGAVCKFHHP  300
KERIIPTPNC VLSSLGLPLR PGEPICTFYS RYGICKFGPN CKFDHPMGTV MYGLATSPTG  360
DVSARRMLAP VPAHSEVSPD NVSGRSRRIT HSDSQQIPSG ERGTEREAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9Z6U30.0A0A0D9Z6U3_9ORYZ; Uncharacterized protein
STRINGORGLA11G0112800.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]