PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G16500.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 384aa    MW: 41634 Da    PI: 8.0786
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G16500.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.6e-115982326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  OGLUM03G16500.3 59 EPDCSYYMRTGLCRFGMTCKFNHP 82
                     789********************8 PP
2zf-CCCH39.11.3e-12104128327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  OGLUM03G16500.3 104 QPECQYYLKTGTCKFGATCKFHHPR 128
                      799********************96 PP
3zf-CCCH39.87.6e-13251276227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  OGLUM03G16500.3 251 DQPECQFYMKTGDCKFGAVCKFHHPK 276
                      689*********************96 PP
4zf-CCCH38.71.7e-12296322127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  OGLUM03G16500.3 296 PGEPICTFYSRYGICKFGPNCKFDHPM 322
                      5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-45683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8685684IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-56184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-46283IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6104130IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5107129IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511249277IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9251276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5252277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4255276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6293321IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178295323IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-10297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4300320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAMATRVQLN ALGYPLRPNE KECAYYLRTG QWPGHSSYAQ VIVPPGLVQV  180
PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV  240
QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCVLSSL GLPLRPGEPI  300
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR  360
SRRITHSDSQ QIPSGERGTE REAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D9Z6U40.0A0A0D9Z6U4_9ORYZ; Uncharacterized protein
STRINGORUFI11G13960.10.0(Oryza rufipogon)
STRINGONIVA11G12740.10.0(Oryza nivara)
STRINGOPUNC11G11150.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-137zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]