PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G19270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 258aa    MW: 28611.9 Da    PI: 9.7587
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G19270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.4e-11132183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      +WT+eEd  l+++ ++ G ++W+++a+ m         +R++ qc++rw  +
  OGLUM03G19270.1 132 AWTPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrRRRSPGQCRDRWSEH 183
                      7************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
SuperFamilySSF481137.23E-132374IPR010255Haem peroxidase
PROSITE profilePS5087312.6782470IPR002016Haem peroxidase, plant/fungal/bacterial
Gene3DG3DSA:1.10.520.104.5E-142570No hitNo description
PROSITE patternPS0043605667IPR019794Peroxidase, active site
PROSITE profilePS5129415.203125188IPR017930Myb domain
SMARTSM007171.2E-9129186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-14132201IPR009057Homeodomain-like
CDDcd001672.49E-5132184No hitNo description
SuperFamilySSF466891.03E-13132206IPR009057Homeodomain-like
PfamPF139216.6E-12133200No hitNo description
PROSITE profilePS500906.133185237IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0055114Biological Processoxidation-reduction process
GO:0098869Biological Processcellular oxidant detoxification
GO:0003677Molecular FunctionDNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAASAMKLAM AVACALALAS ACHGLQLGYY KQSCPHVEAI VRDEVKKFVY KDAGIGAGLI  60
RLVFHDCFVE QPATEKKIDV IAMALQGMEQ EAAGQPPASA AFPSSAEEAA AAAASPTSGG  120
KRIVLRIRLP PAWTPEEDAC LARLAAENGF RHWRRVAEGM AAARSGRRRR RSPGQCRDRW  180
SEHLARDVYH RPFTADDDAE LARLLLKRDG ERSWKDIGRA AYCRTSRGMR RRWRELRDSD  240
AFLRKLWCPP PPPMQPSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131250.0AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645625.12e-59PREDICTED: transcription factor MYB44-like
TrEMBLA0A0D9Z7V50.0A0A0D9Z7V5_9ORYZ; Uncharacterized protein
STRINGOGLUM03G19270.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-06myb domain protein r1