PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G19400.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 178aa    MW: 19238.2 Da    PI: 6.7999
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G19400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57387.91.2e-2782154271
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 
                      lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++
  OGLUM03G19400.1  82 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDR 154
                      79*************************9977778***********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-2383157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLPTVVDDPS AAAAAAVGAA ASSSFPDADV YGNGDSDDID FPSDPNHATT QAFSSATAAA  60
AAAGPGGGGG AGSGSGGERR PLFQRLWTEE DEIVILRAFA EFTAQRGTAF ASHQYDTDPF  120
YEDMRRRLQL DFSKSQLVEK LRRLKRKYRN CVDRLRATGH LGRWDGDRRW RRLLGVTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAK2432080.0AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCT8377480.0CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.11e-108probable transcription factor At3g04930
TrEMBLA0A0D9Z7W91e-125A0A0D9Z7W9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G19400.11e-126(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-25DNA-binding storekeeper protein-related transcriptional regulator