PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G20780.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 409aa MW: 44815.5 Da PI: 6.2894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G20780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	358	397	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +rRR+ri + + Lr+++P +k + ++L +A+ Y+k+L OGLUM03G20780.1 358 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 397 9******************97...333..3458999999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.597	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00141	358	402	No hit	No description
SuperFamily	SSF47459	2.75E-6	358	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-6	358	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MSRRKACVAA GAFPSEGADK RSRAAPHALA HGYPGSMRWL ALSVDIFRKG ISLNLYCRSL 60 KFGIEDLVAG IAVWVSVVAW QFFQGERAGV LMVWQPVAQT RFRVFKHENG IAVRVIACFQ 120 PSQDCQAEYF RHLLKPKILF AGCFLMGEKV NPWCHWSNPP WTESSANNLH PPDVSLDNTN 180 SVALPTYLNS DGYIYSGVAA SMPSIAASGT LDTVPELQGS NETNVTDVGA QNTECMHENT 240 EEIDALLCSD SDEGCLKVQE LNNRVRKYPM QNDTMSVESV ASAGASQPAK KRRLSSGTDR 300 SVVDTASSAR PDHSVDQKHL SHDDDAQSCC IGEVESDHQF ALREGEEAEG DDGPDDRKRR 360 RERIQETVAA LRKIVPGGIA KDATAVLDEA ICYLKYLKLK VKTLGAVSL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MSRRKACVAA GAFPSEGADK RSRAAPHALA HGYPGSMRWL ALSVDIFRKG ISLNLYCRSL  60
KFGIEDLVAG IAVWVSVVAW QFFQGERAGV LMVWQPVAQT RFRVFKHENG IAVRVIACFQ  120
PSQDCQAEYF RHLLKPKILF AGCFLMGEKV NPWCHWSNPP WTESSANNLH PPDVSLDNTN  180
SVALPTYLNS DGYIYSGVAA SMPSIAASGT LDTVPELQGS NETNVTDVGA QNTECMHENT  240
EEIDALLCSD SDEGCLKVQE LNNRVRKYPM QNDTMSVESV ASAGASQPAK KRRLSSGTDR  300
SVVDTASSAR PDHSVDQKHL SHDDDAQSCC IGEVESDHQF ALREGEEAEG DDGPDDRKRR  360
RERIQETVAA LRKIVPGGIA KDATAVLDEA ICYLKYLKLK VKTLGAVSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	360	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC099323	0.0	AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBank	AK065674	0.0	AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631787.1	0.0	transcription factor PIF4
TrEMBL	A0A0D9Z8E0	0.0	A0A0D9Z8E0_9ORYZ; Uncharacterized protein
STRING	OGLUM03G20780.2	0.0	(Oryza glumipatula)