PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G21800.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 512aa    MW: 53101.3 Da    PI: 6.5179
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G21800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.52.3e-581345092374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                      ++lL  cA av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+ l    ++ +   p+ +++   + + + a  + f+evsP++ + 
  OGLUM03G21800.1 134 EQLLNPCAVAVEAGNLSRVQHLFYVLGELESFSGDANHRLAAHGLRALARWLPAALTTSSXPTPAVAAA---EPRLFRASLIrFHEVSPWFALP 224
                      689*************************************************99444444333333333...33333333336*********** PP

             GRAS  95 hltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeeleetgerLakfAeel 172
                      + +aN aI +a          + +H++D+++s+G+QWp+Ll++L+ +p  + pps+R+T+vg+ ++          +         L ++A+++
  OGLUM03G21800.1 225 NALANAAIAQASTCGaagatpRPLHVVDLGVSHGVQWPTLLESLTRQPggRAPPSVRLTVVGPGATAtspaapfsASPPGYDFSPHLLRYAKSI 318
                      **********96533345567889************************656699********98777889999987888899999********* PP

             GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerfleal 261
                      +++++++   a +l+d        + gEal+V+l+++l +        ++er+evL+  ++l+P++vv++e +     +  +++s + +f+  l
  OGLUM03G21800.1 319 NLDLRISR--AATLDDA----VPGDDGEALVVCLQFRLGHAA------AEERREVLRKARGLNPELVVLSELDsgvgvVGGDGGSAAGEFAARL 400
                      *******8..5667766....66789**********999997......445899******************94443333356699******** PP

             GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                      e  + +++s++a +    + + + Er+ll+ e+  ++a++  +  + +e  e Wrer+ +aGF+++p++ +a+++a++llrk++ +++++  + 
  OGLUM03G21800.1 401 ELLWRFLESTSAAF----KGKDVEERRLLEAEAGAILAAADVA--AAREGREGWRERMAAAGFEEAPFGAEAVESARSLLRKYDsGWEMSAPSP 488
                      **********9997....7777888889999999999999887..7778899********************************6555666666 PP

             GRAS 355 sgslv.lgWkdrpLvsvSaWr 374
                       +++v l Wk++p+ ++S Wr
  OGLUM03G21800.1 489 AAAAVaLRWKGQPVSFCSLWR 509
                      666667**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.616107487IPR005202Transcription factor GRAS
PfamPF035148.0E-56134509IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSYHEQERHG GNGLDWFEES MSSLLAADVD LAGGGGDAGG GGYAWWWAAS PAAQQDDIGS  60
VVAQTLSPPS MAAPAAASPS IASPAASSPS DVPSSSSKKR KSPAHRAPGH TGGKKGGGGK  120
GGGGGSDRDM RWAEQLLNPC AVAVEAGNLS RVQHLFYVLG ELESFSGDAN HRLAAHGLRA  180
LARWLPAALT TSSXPTPAVA AAEPRLFRAS LIRFHEVSPW FALPNALANA AIAQASTCGA  240
AGATPRPLHV VDLGVSHGVQ WPTLLESLTR QPGGRAPPSV RLTVVGPGAT ATSPAAPFSA  300
SPPGYDFSPH LLRYAKSINL DLRISRAATL DDAVPGDDGE ALVVCLQFRL GHAAAEERRE  360
VLRKARGLNP ELVVLSELDS GVGVVGGDGG SAAGEFAARL ELLWRFLEST SAAFKGKDVE  420
ERRLLEAEAG AILAAADVAA AREGREGWRE RMAAAGFEEA PFGAEAVESA RSLLRKYDSG  480
WEMSAPSPAA AAVALRWKGQ PVSFCSLWRP AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-2513151131421Protein SHORT-ROOT
5b3h_E4e-2513151131421Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110125TGGKKGGGGKGGGGGS
2117124GGKGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A0D9Z8R90.0A0A0D9Z8R9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G21800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-45GRAS family protein