PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G21860.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 354aa    MW: 37738 Da    PI: 4.9234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G21860.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++lv +++++G g W + +++ g++R++k+c++rw++yl
  OGLUM03G21860.2 14 RGAWTAMEDDILVSYIAKHGEGKWGALPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding45.51.8e-1467122147
                      TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++          tW++Ia +++ gRt++++k++w++ 
  OGLUM03G21860.2  67 RGNISGDEEELILRLHTLLGNRprrfynydllTWSLIAGRLP-GRTDNEIKNYWNST 122
                      6777889***********************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129421.922965IPR017930Myb domain
SuperFamilySSF466892.77E-2312119IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002494.0E-151461IPR001005SANT/Myb domain
CDDcd001677.51E-111661No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2065126IPR009057Homeodomain-like
SMARTSM007173.0E-1066125IPR001005SANT/Myb domain
PROSITE profilePS5129412.15366127IPR017930Myb domain
PfamPF002494.5E-1167122IPR001005SANT/Myb domain
CDDcd001676.18E-871123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRKPCCSKE GLNRGAWTAM EDDILVSYIA KHGEGKWGAL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI SGDEEELILR LHTLLGNRPR RFYNYDLLTW SLIAGRLPGR TDNEIKNYWN  120
STLSKRVAMQ RTAAATSMPA AATTSSNADA AGAAARRRRS PEPRTVVVSP IRTKALRCNN  180
NSSSGIVVVQ QAGACSHGGR PPESGAPGDA AADKVATPQA VQQQQQQQQQ ELAGADDDDD  240
LPVPAVCIDL DLDDIELGGL DGFLISPWRG GGHDDDNAAA AGAVPNLPMP IGYELGGGGG  300
GGGEAGAVDL EALLGQLDAG EDDDGDHHHH QQEEVPSSLG DEDDDYLELA PWLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221212725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1134330.0AC113433.8 Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence.
GenBankAK1106830.0AK110683.1 Oryza sativa Japonica Group cDNA clone:002-169-H06, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629423.11e-177anthocyanin regulatory C1 protein
TrEMBLA0A0D9Z8S60.0A0A0D9Z8S6_9ORYZ; Uncharacterized protein
STRINGOGLUM03G21860.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2000155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-55MYB family protein