PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G22040.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 217aa MW: 22873.3 Da PI: 7.0232

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G22040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.1	5.2e-58	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plk yl+k+re+eg OGLUM03G22040.1 23 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEG 116 89******************************************************************************************** PP NF-YB 96 ek 97 e+ OGLUM03G22040.1 117 ER 118 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-54	20	141	IPR009072	Histone-fold
SuperFamily	SSF47113	1.8E-41	25	148	IPR009072	Histone-fold
Pfam	PF00808	6.9E-28	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.5E-20	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.5E-20	75	93	No hit	No description
PRINTS	PR00615	7.5E-20	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MPDSDNDSGG PSNYAGGELS SPREQDRFLP IANVSRIMKK ALPANAKISK DAKETVQECV 60 SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEDY VDPLKHYLHK FREIEGERAA 120 ASTTGAGTSA ASTTPPQQQH TANAAGGYAG YAAPGAGPGG MMMMMGQPMY GSPPPPPQQQ 180 QQQHHHMAMG GRGGFGHHPG GGGSSSSSGH GRQDRGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-48	21	113	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288040	0.0	AB288040.1 Oryza sativa Japonica Group OsHAP3I gene for HAP3 subunit of HAP complex, complete cds.
GenBank	AC120529	0.0	AC120529.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0039N21, complete sequence.
GenBank	AK060225	0.0	AK060225.1 Oryza sativa Japonica Group cDNA clone:001-002-G06, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	AY062181	0.0	AY062181.1 Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3a) mRNA, complete cds.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631006.1	1e-103	nuclear transcription factor Y subunit B-8
Swissprot	Q75IZ7	1e-104	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D9Z8V2	1e-159	A0A0D9Z8V2_9ORYZ; Uncharacterized protein
STRING	OGLUM03G22040.1	1e-160	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-69	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]