PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G24880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 497aa    MW: 52632.3 Da    PI: 5.0555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G24880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-1756103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WTt Ed  lv+ v+q+G g+W+++ r+ g+ R++k+c++rw ++l
  OGLUM03G24880.1  56 KGPWTTAEDAVLVQHVRQHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 103
                      79******************************99***********996 PP
2Myb_DNA-binding50.93.5e-16109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  OGLUM03G24880.1 109 KGSFSPDEELLIAQLHAQLGNK-WARMASHLP-GRTDNEIKNYWNT 152
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.80451103IPR017930Myb domain
SuperFamilySSF466891.8E-2855150IPR009057Homeodomain-like
SMARTSM007179.2E-1455105IPR001005SANT/Myb domain
PfamPF002493.8E-1456103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2157110IPR009057Homeodomain-like
CDDcd001676.95E-1158103No hitNo description
PROSITE profilePS5129422.55104158IPR017930Myb domain
SMARTSM007178.0E-15108156IPR001005SANT/Myb domain
PfamPF002493.9E-15109152IPR001005SANT/Myb domain
CDDcd001677.16E-11111152No hitNo description
Gene3DG3DSA:1.10.10.603.1E-24111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEEMIKPAPA PASSEEEKEV VATAATGERR HEEATAGREE QEEEEEEEEA PVVLKKGPWT  60
TAEDAVLVQH VRQHGEGNWN AVQRMTGLLR CGKSCRLRWT NHLRPNLKKG SFSPDEELLI  120
AQLHAQLGNK WARMASHLPG RTDNEIKNYW NTRTKRRQRA GLPVYPPDVQ LHLAFAKRCR  180
YDDFSSPLSS PQQSAGSNVL SMDAADAAGA ASSGYTSARP PPLDLAGQLA MGSRPVQLLA  240
ATPFSAPSSP WGKPFARNAQ FFQFPHSSPV SPTTPTGPVQ VHPVTPELSL GYGLHAGDRA  300
RLPPVSPSPG ARAELPSSQL RPSMAPTTAA AAATGGLVGG ALQDHPNAAS LEAMLQELHD  360
AIKIEPSAPP ENRGTEEEGG GGGGNLRGVS GDGKPEVELK DDIETLFDLI IPATFPAAAP  420
EPAAAATAAS AAPNHSSSVS QHSSDDQDHS NGADVVLDLP ILTGGGGGSS EQDDWSLDGA  480
ACQWDNISGG ICRHEFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-285415725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1479620.0AC147962.1 Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629365.10.0transcription factor MYB65
TrEMBLA0A0D9Z9V80.0A0A0D9Z9V8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G24880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.26e-66myb domain protein 101