PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G25260.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 370aa    MW: 36494.6 Da    PI: 8.5769
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G25260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-3941101262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  OGLUM03G25260.1  41 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 101
                      57889*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.8E-334399IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6094599IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-234694IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104783IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAPAAGDDAV VPRKGAGGGG TTTPPPPPPA QQQPLPPPPP QEQGLRCPRC DSPNTKFCYY  60
NNYSLSQPRH FCKTCRRYWT KGGALRNVPV GGGCRKNKRS RSAAAASRLS LNLPTVEGIG  120
GAAADPAAAA AARLGFLGGG TTMMVSSSTS PLGGAAAAVA DFQQGGAVGM LPLPRLQSPA  180
GGGVGHHQYV PFGEWPSGDI AGGNAVNGGG GHGAVSSTIA SSIESLSFIN QDLHWKLQQQ  240
RLATMFLGPP GSASAAAAAQ ANDGGGNGAQ ATASGHAAGG GGGAFMHMAG SVPSMEAAMP  300
SATSWFMDSC SYGLPSPPPP ATAAVAATTS SNLNSGGRSS GGGGGDDNAT SNCGSAIPAW  360
GDISTFAMLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335343GGRSSGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630014.11e-159dof zinc finger protein DOF5.7
TrEMBLA0A0D9ZA110.0A0A0D9ZA11_9ORYZ; Uncharacterized protein
STRINGOGLUM03G25260.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-29DOF zinc finger protein 1