PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27090.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 526aa    MW: 54691.1 Da    PI: 8.7187
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.34.4e-3548102559
           zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                        +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ 
  OGLUM03G27090.1  48 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 102
                      579*************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088427.55949103IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3049101IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-225096IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MPGQVMEAAL QQLPASMASG SLLLPPACLQ HPLPAAAAAS GGVGGSSREQ CPRCASHDTK  60
FCYYNNYNTS QPRHFCRACR RYWTLGGSLR NVPIGGSTRK RPRPPVRRPP VHFAAASAPP  120
HHHHHHHGGP LTPPPATSSS SQQAGLLGSL FALGAAPLLE GRVGVGFDLG LGLPGPGHHH  180
AVAGGGGPAA AVATSSSSAA AAPLLWPTGL LDSSSNNAET WRMAAGGMWP EFTAAAAAAQ  240
IESVADDSAN SVQNIRLVID IGDTTIQVPL NGPTVVQNIG RQAAAAVAGD SSAGGVSEKT  300
GGAGGGGGEE WMQEQDGLLC MRGWLMALAT LFAAMAQRCG RRGGCLPRPR DWFAALLAAD  360
PAAAAVTRDQ AGKAMLYLIV NTCTFATSLA VLPDAARCRQ RLRVEEGHRE ADHQHDDGRR  420
AVRRGDVRAL RRRRLPAHGP FVGTVVAAVT VVVVRCNLAL PFRGGDAGHG CSWTGIKEDT  480
IEMLLPSSVV RACNPSCGGR ELAGFGCCWG IEVYTRYFSP GSRAGC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103KRPRP
2418434RRAVRRGDVRALRRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZAM10.0A0A0D9ZAM1_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27090.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1257544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-23DOF zinc finger protein 1