PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27220.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 723aa    MW: 80575.3 Da    PI: 6.4846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18421221499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++p +fa++++g    s  + l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  OGLUM03G27220.1  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                      45899*****888666..6779***************..5555555***************************99999..8888875 PP
2B336.58.4e-122673381584
                      -EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  15 rlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       + ++ +fa ++ g+ +  +++++e   g     +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  OGLUM03G27220.1 267 TVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 338
                      556778888888444.45668999998778999*******65555555.6788*******************96 PP
3B351.42e-163884661799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      ++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl+ GWkeFv+ ng++egD ++F+++g  s+f   v +f+ 
  OGLUM03G27220.1 388 TVPARFANNFNGH--ISEEVNLRSPSGETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLFRYSGVsSSF--DVLIFDP 466
                      6899***888666..6779***************..5555445***************************987887..8888875 PP
4B336.58.4e-12605685585
                      -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  OGLUM03G27220.1 605 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNRLVAHDICLFELT 685
                      4445554445599999********76563.3..6999998999*******9999999986.77*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2228127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.00229123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-2229125IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-1132123IPR003340B3 DNA binding domain
CDDcd100172.17E-1840121No hitNo description
PfamPF023621.5E-1542121IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-13245338IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-14245339IPR015300DNA-binding pseudobarrel domain
CDDcd100179.99E-11249338No hitNo description
SMARTSM010190.0095251358IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898253355IPR003340B3 DNA binding domain
PfamPF023621.2E-9267338IPR003340B3 DNA binding domain
SMARTSM010190.0047383467IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-19387469IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-17388472IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-13388465IPR003340B3 DNA binding domain
CDDcd100173.60E-16388465No hitNo description
PROSITE profilePS5086313.719389467IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-15596685IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15597712IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-11599684No hitNo description
SMARTSM010190.0075601705IPR003340B3 DNA binding domain
PROSITE profilePS5086310.179601715IPR003340B3 DNA binding domain
PfamPF023621.9E-9613685IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MGMLKIGENC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEQASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS  180
AYHREEKKEG DDEDEDEDED EDEDEDEDKD GEDRYYFCRH GGRVTEYNLS KGDKEEISRV  240
PVPVEPGNPV LVKVIHASHL LSSRYSTVGV SPEFAGRYLG PAMAREVVME RGGGGGGGDQ  300
WHVRFVRRES SRGFHGTGWR RFARDNGLLA HDVCLFELRL VDGAGAGDRL RRRPRPTMAV  360
HVLRRARTAA FARSGKNTAT GAIWPTTTVP ARFANNFNGH ISEEVNLRSP SGETWSIGVA  420
NSDAGELVLQ PGWKEFVDGN GIEEGDCLLF RYSGVSSSFD VLIFDPSGCE KASPHFVGSH  480
GFGRAENSAG AEQGGRNGRR TPPIVDGDNG HRHHLEMTLH RNSCRSIPRA CKRSLFSDET  540
EAKENDGEDE DEDVVAAAEG GRYGEYYFSR HGRVAEYNLR EEDREEISRV PVPVLPGNPV  600
FVQVIHSSHV RSSKYCIVGV SPEFAGKYLG AVEREVVLER ASRGGEWHVL FVHRQNTRGF  660
YGAGWRQFAG DNRLVAHDIC LFELTMVDAA AGGGGNRRRR WSRRPTMTVH VLRRVRGRFV  720
LLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352DRLRRR
2348354RLRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086600.0AK108660.1 Oryza sativa Japonica Group cDNA clone:002-148-F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLA0A0D9ZAN80.0A0A0D9ZAN8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27220.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]