PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G27650.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 815aa MW: 89829.1 Da PI: 7.3677

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G27650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	28.9	2.3e-09	571	597	15	41
TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41 k YCeCfa++++Cse+C+C +C+N+++ OGLUM03G27650.1 571 KSYCECFASKVYCSESCSCRGCFNDHS 597 99**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	12.008	563	647	IPR005172	CRC domain
SMART	SM01114	1.1E-4	564	598	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.1E-6	571	595	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MSIKIFRGEY DANITREEVV WSRMVLATKD GTIWARLFVV DREGYWSLSS ILRQWLGSET 60 NKEGARGGGR FEVVATTCEV TVVVVVGCMK EMSAGQFYCK GQERVDGGAG VKRRGAPQRK 120 GWDSPFLNFV KSLSPISSSQ PLDAVPNLQM IKSSDLVHIP SIFTSPEFTH FGLMNTSAKP 180 CQDGLSPYCH MTQIGRSSCI KQSGPMTIAS KNCSIDRSLS QAYHDSPDNA SILPTNLARC 240 IQLSSDTLGS DKRHGIAGKT DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH 300 NDEITACDWD YLGTQYDSSV VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS 360 RRKLFQGSAD CYSQSAVDNI HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV 420 PSDYMAMNPS AVSQHLRGLH RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS 480 KLVGSPVCAL PNVDLHLVRM TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PVNQLAPNTS 540 EMNTHNQGDY SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHAE 600 TVLSTRNRIE SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIEL FETKEIERAD 660 RKMKDHPKEE QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST 720 RTSSHLHSPT RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL 780 RTGNTLSPTC RKELGLKSII PPFPSLTGDA NSELQ

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MSIKIFRGEY DANITREEVV WSRMVLATKD GTIWARLFVV DREGYWSLSS ILRQWLGSET  60
NKEGARGGGR FEVVATTCEV TVVVVVGCMK EMSAGQFYCK GQERVDGGAG VKRRGAPQRK  120
GWDSPFLNFV KSLSPISSSQ PLDAVPNLQM IKSSDLVHIP SIFTSPEFTH FGLMNTSAKP  180
CQDGLSPYCH MTQIGRSSCI KQSGPMTIAS KNCSIDRSLS QAYHDSPDNA SILPTNLARC  240
IQLSSDTLGS DKRHGIAGKT DHETAQKHAK LSCFDQRCLD KMKQLTSGMN VQKRDLAKTH  300
NDEITACDWD YLGTQYDSSV VPESDLRFET AELLLETPKN GDAMPGKSFL PIVEANLENS  360
RRKLFQGSAD CYSQSAVDNI HAYCTSRGKE VATNHVSGIL PCPRESQLIP DHHFSDSLEV  420
PSDYMAMNPS AVSQHLRGLH RRSLFNDKVR DPTMGVQSVS NLGASTCATR HRSIPDDNYS  480
KLVGSPVCAL PNVDLHLVRM TEEMVPYNMT CTVNSTLSIS EHNTEISTVV PVNQLAPNTS  540
EMNTHNQGDY SSQATMPTSA GNSGQENPKR KSYCECFASK VYCSESCSCR GCFNDHSHAE  600
TVLSTRNRIE SRNPLAFAPK VIRTCGPGLE FGEDSNATPA SSRHKRGIEL FETKEIERAD  660
RKMKDHPKEE QSEMDKYHAL CEIWGVRSTE NLFTTPSMDS RRAFALFPSE CPKSSLTSST  720
RTSSHLHSPT RTDVLLSPFG SYTQMLLGNE ASDMLLQQGD SSCTASLRIA SPNKKRVSPL  780
RTGNTLSPTC RKELGLKSII PPFPSLTGDA NSELQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120505	0.0	AC120505.7 Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025879709.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0D9ZAU5	0.0	A0A0D9ZAU5_9ORYZ; Uncharacterized protein
STRING	OGLUM03G27650.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14774	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-25	TESMIN/TSO1-like CXC 2