PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27730.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 514aa    MW: 53626.9 Da    PI: 7.0552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27730.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.6e-17327373455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  OGLUM03G27730.3 327 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 373
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-21321385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.98E-18326377No hitNo description
Gene3DG3DSA:4.10.280.109.4E-21327381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-14327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAQGSS  60
AAVQEDEAGL WFPFALADSL DKDIFSDLFY EAPVAATAAA APAGPGAGAD GEGKTCKGDT  120
AMAEEERGGP GAASEAPREL MPPPKSTHAS CSRQQTMSLA DGGDNAGDLS ELVRARRSSG  180
GAARRKAEAG GGGGGASSSM LSAIGSSICG SNQVQVQQRT ASEPGRRGAP PSAVGSANAI  240
PCGGRGHGHG HEATTVASSS GRSNCCFGTT TTTEPTSTSN RSSKRKRLDT TEDSESPSED  300
AESESAALAR KPPAKMTTAR RSRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS  360
MLDEAIEYLK SLQLQLQMMW MGSGMAPPVM FPGVHQYLPR MGVGMGAAAA AAMPRMPFMA  420
APQPVVPTPP VNHLADGSPG YRGHMPAAAA AAVGLAEPYA HYLGVNHLQP PPTQGVGYYP  480
LGAKAVQQQQ NPPLHVPNGS IMPPENAPNT GSGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605050.0AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880142.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A0D9ZAV50.0A0A0D9ZAV5_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27730.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-33phytochrome interacting factor 3