PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G28230.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 390aa    MW: 40721.6 Da    PI: 8.0122
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G28230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.84.8e-30205261158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy++Il+RR +Rak+++e++l  k+rkpylheSRh+hA+rR+RgsgGrF
  OGLUM03G28230.1 205 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 261
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-33203264IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01204264IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-27207261IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-23207229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-23238261IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAIAVEEGLH LPPQAEILLD AIGGVAVACV LEPPCFSFSL SLSSARETTT TVAAAMLSFK  60
QSHEGFGHVA AAGAGPQQQQ QPWWAGSQLL YGEASPEEAA LRDGGQFQVV PGGRAALDPA  120
APEPEKTAVP SMPKRGGGGG APEVLKFSVF SGNLEPGDTG EKNREHSATI AMQSLLPEYN  180
GHFELGLGQS MSGGRMLLPL NAPADAPIYV NAKQYEGILR RRRARAKAQR ENRLVKGRKP  240
YLHESRHRHA MRRARGSGGR FLNTKKEATA AGCGGSSKTP LASLVSPADV VHRPGSRGGG  300
AGRASSLSGS DVSSPGGGMY DHHRHDDADA ADHYNSIDHH LRTPFFTPLP IIMDSGGGGG  360
DHASHSAAAV AAPFRWATAA GDGCCELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A9e-18205262260HAPB protein
4g92_A9e-18205262260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245254RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063980.0AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628114.11e-180nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA0A0D9ZB300.0A0A0D9ZB30_9ORYZ; Uncharacterized protein
STRINGOGLUM03G28230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.14e-22nuclear factor Y, subunit A6