PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G30900.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 447aa MW: 46303.6 Da PI: 4.7689

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G30900.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	252	272	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++Cg++F ++ L H OGLUM03G30900.1 252 FVCSICGRCFGSHQALGGHVL 272 89********99998877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.64E-7	250	274	No hit	No description
PROSITE profile	PS50157	9.411	252	279	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.8E-4	252	270	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	252	274	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	254	274	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.64E-7	372	399	No hit	No description
Pfam	PF13912	9.0E-7	377	401	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	377	399	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	377	404	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	379	399	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVDRYVFL ARQPAPPVDR 60 DDADADAGAE GTGCCKRKRR VVDDDDDGDG FSPRQPALLD GSGGQAAEEE DDDEGSSDDD 120 DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI 180 AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAAAA 240 AAEAAERASK RFVCSICGRC FGSHQALGGH VLGHKKKAKN AAIAAAARDA TTTAVTEAVA 300 PASQRQSFFA ADINGQDERG CDGAEGSRYD DDEEKSPVVV DDVAHGDGEE NDKIAGVVVA 360 SSHDGDSDVG KMKIVQHKCD ECGKVCLTGQ ALGGHMSKHR RTRPAANGGE GPATATVADG 420 GAQTVRLIGD DVCLQRAVAI AGFHSAQ

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MAVNSGDRAR ARGHHGDDDE EGVAVVGEDY PYCSDSDSDD DDDVDRYVFL ARQPAPPVDR  60
DDADADAGAE GTGCCKRKRR VVDDDDDGDG FSPRQPALLD GSGGQAAEEE DDDEGSSDDD  120
DAMAPRGEAG GGGRGRGVGK VSRKKARLVD LIRSPLLPAE LDGSDKAAPP PPRGVCPKKI  180
AVVVQAKNRK RRRFVDGGEE QEPQPQPPVR GKRSRGPDLE ASEGLQTASA AAAAAAAAAA  240
AAEAAERASK RFVCSICGRC FGSHQALGGH VLGHKKKAKN AAIAAAARDA TTTAVTEAVA  300
PASQRQSFFA ADINGQDERG CDGAEGSRYD DDEEKSPVVV DDVAHGDGEE NDKIAGVVVA  360
SSHDGDSDVG KMKIVQHKCD ECGKVCLTGQ ALGGHMSKHR RTRPAANGGE GPATATVADG  420
GAQTVRLIGD DVCLQRAVAI AGFHSAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	192	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC097368	0.0	AC097368.3 Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9ZBZ9	0.0	A0A0D9ZBZ9_9ORYZ; Uncharacterized protein
STRING	OGLUM03G30900.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16380	7	7