PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G32460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 379aa    MW: 41990.2 Da    PI: 5.8424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G32460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10182230355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OGLUM03G32460.1 182 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 230
                      58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16177246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-11177234No hitNo description
PROSITE profilePS5088815.447179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-8182230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MRTGTRGSCD LAVREQGKIG VSEQLEMYSG QQSDQCPGPN SGKEFLEVNW DSVALHQKMG  60
YNSGAFGFQA YPMVLEDREG LYRSPNGTFC QNIQLSDDHS SGAKRRKGID DHIALLNPSA  120
SSRIQNVGDQ QTEVSSQQER ISMEEDNQKS CSKMQSKEDS SDGDGTKEDY VHVRAKRGQA  180
TNSHSLAERL RRKKISERMK LLQDLVPGCS KITGKAVMLD EIINYVQSLQ RQVEFLSMKL  240
ATVNPELSFD IEQILSKQMM LSQDRHLAFY GVDSGSSALV AHFNQGIMQP EMLCNVSNPA  300
DVLQGTTIQD ISTVNQIPAM WEGLQNIPHL NYNPGGAMAE GSTNNSGIYD PKFCQKLCLV  360
LVIYQTHGNV PPFCTLQVP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632666.10.0transcription factor bHLH74
RefseqXP_015632667.10.0transcription factor bHLH74
RefseqXP_025879964.10.0transcription factor bHLH74
RefseqXP_025879965.10.0transcription factor bHLH74
TrEMBLA0A0D9ZCL40.0A0A0D9ZCL4_9ORYZ; Uncharacterized protein
STRINGOGLUM03G32460.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-52bHLH family protein