PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G34160.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 505aa    MW: 57946.1 Da    PI: 9.9203
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G34160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.7e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
  OGLUM03G34160.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59
                     9***********************************************96 PP
2SRF-TF95.13.2e-30261311151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++
  OGLUM03G34160.1 261 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYAT 311
                      79***********************************************86 PP
3K-box90.43.4e-30791745100
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +  + ++ ++++ +qe+ +Lk+ +e Lq++qR+llGedL +L  +eL+qLe+q+ + lk+iRs+K+++ll+++ +l++ke++lq++n+ L++kl
  OGLUM03G34160.1  79 DAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKL 172
                      444567889************************************************************************************9 PP

            K-box  99 ee 100
                      +e
  OGLUM03G34160.1 173 DE 174
                      86 PP
4K-box104.11.7e-34331423597
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         s+e+ ++ ++++e++kLk+++e++q+ q+hl+GedLesL+lkeLqqLeqqLe+slk+iRs+K++l+le+i+elq+kek+lqeenk L+k+
  OGLUM03G34160.1 331 VLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKE 423
                      55567788899******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.02161IPR002100Transcription factor, MADS-box
CDDcd002651.57E-38279No hitNo description
SuperFamilySSF554553.14E-30283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2685172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.72388178IPR002487Transcription factor, K-box
SMARTSM004322.3E-40253312IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.941253313IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33254338IPR002100Transcription factor, MADS-box
PROSITE patternPS003500255309IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-30255275IPR002100Transcription factor, MADS-box
CDDcd002656.40E-39256328No hitNo description
PfamPF003194.7E-25262309IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-30275290IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-30290311IPR002100Transcription factor, MADS-box
PfamPF014861.5E-29336423IPR002487Transcription factor, K-box
PROSITE profilePS5129717.556340437IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS  60
SNMLKTLERY QRYIYASQDA AAPTSDEMQN NYQEYVNLKA HVEILQQSQR NLLGEDLAPL  120
ATNELEQLES QVVRTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLDEIDVEAA  180
PPQPPWNGNC SNGHGGGGGV FSSEPPQPEH FFQALGLHAV DVNQPPAPPP GGREREREGG  240
RRRRRRRKNR RKMGRGKVQL KRIENKINRQ VTFSKRRSGL LKKANEISVL CDAEVALIIF  300
STKGKLYEYA TDSCMDKILE RYERYSYAEK VLISAESDTQ GNWCHEYRKL KAKVETIQKC  360
QKHLMGEDLE SLNLKELQQL EQQLENSLKH IRSRKSQLML ESINELQRKE KSLQEENKVL  420
QKENPCSFLQ LVEKQKVQKQ QVQWDQTQPQ TSSSSSSFMM REALPTTNIS NYPAAAGERI  480
EDVAAGQPQH VRIGLPPWML SHING
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-211326173MEF2 CHIMERA
6bz1_B1e-211326173MEF2 CHIMERA
6bz1_C1e-211326173MEF2 CHIMERA
6bz1_D1e-211326173MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234243REREGGRRRR
2236245REGGRRRRRR
3240246RRRRRRR
4241247RRRRRRK
5241249RRRRRRKNR
6242250RRRRRKNRR
7247252KNRRKM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5519160.0AY551916.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS211 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631033.11e-161MADS-box transcription factor 14 isoform X1
SwissprotQ10CQ11e-153MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLA0A0D9ZD980.0A0A0D9ZD98_9ORYZ; Uncharacterized protein
STRINGOGLUM03G34160.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]