PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G34520.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 220aa    MW: 23795.9 Da    PI: 9.8788
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G34520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054e-333693259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  OGLUM03G34520.1 36 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 93
                     8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-342094IPR003657WRKY domain
SuperFamilySSF1182907.98E-292794IPR003657WRKY domain
PROSITE profilePS5081129.9643095IPR003657WRKY domain
SMARTSM007748.6E-393594IPR003657WRKY domain
PfamPF031062.4E-263693IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTRPAAAATA TAKKGQKRAR QPRFAFMTKS EIDHLEDGYR WRKYGQKAVK NSPFPRSYYR  60
CTNSKCTVKK RVERSSDDPS VVITTYEGQH CHHTASFQRG VGGAAVAAHI HGAAAVALAE  120
QMSAFVSPPP QPHMLYGLPR LHPPSSSETA VSCSMPTTTS LQELNNGEGL QRPGYNNSPQ  180
AAVTIAQRPP SPSVPPAVSF DKGLLDDIVP PGTYLPTLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-262592774Probable WRKY transcription factor 4
2lex_A1e-262592774Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418590.0AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631421.11e-135probable WRKY transcription factor 57
RefseqXP_015631422.11e-135probable WRKY transcription factor 57
TrEMBLA0A0D9ZDE51e-162A0A0D9ZDE5_9ORYZ; Uncharacterized protein
STRINGOGLUM03G34520.11e-163(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-49WRKY DNA-binding protein 57