PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G34520.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 143aa    MW: 15410.8 Da    PI: 11.2881
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G34520.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.22.9e-123657223
                     --SS-EEEEEEE--TT-SS-EE CS
             WRKY  2 dDgynWrKYGqKevkgsefprs 23
                     +Dgy+WrKYGqK vk+s+fpr 
  OGLUM03G34520.2 36 EDGYRWRKYGQKAVKNSPFPRI 57
                     8*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-122057IPR003657WRKY domain
SuperFamilySSF1182903.01E-102758IPR003657WRKY domain
PROSITE profilePS5081113.1843058IPR003657WRKY domain
SMARTSM007741.0E-43573IPR003657WRKY domain
PfamPF031067.8E-83656IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MTRPAAAATA TAKKGQKRAR QPRFAFMTKS EIDHLEDGYR WRKYGQKAVK NSPFPRIFSI  60
ASAVLTGTVD FSTTILSDLD TSAIILAALS QSAALPAPRP RVLVGVFTDT KMMSASATCF  120
STSVLKKRFL PLHSLTTSSS PGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798871e-128AC079887.17 Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence.
GenBankAP0149591e-128AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankKM6703311e-128KM670331.1 Oryza sativa UDP-glucose 6-dehydrogenase (LOC_Os03g55070.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZDE62e-98A0A0D9ZDE6_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-20WRKY DNA-binding protein 57