PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G36280.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 363aa    MW: 36663.1 Da    PI: 8.6808
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G36280.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.86.5e-37681831105
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaessss 80 
                      a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  ++  + ++s++
  OGLUM03G36280.2  68 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRQRSQQ 157
                      5899*************************************************************8888876643321....222332333333 PP

              TCP  81 sasnsssgkaaksaa.kskksqksaa 105
                      ++++ s+++ ++s+  +sk s+k+ +
  OGLUM03G36280.2 158 QQQQLSNKSGCSSTSeTSKGSDKEVT 183
                      33333333333333323333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-3570179IPR005333Transcription factor, TCP
PROSITE profilePS5136932.60771129IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGXGQTGSTA  60
SRIYRVRATG GKDRHSKVYT AKGIRDRRVR LSVATAIQFY DLQDRLGFDQ PSKAIEWLIN  120
AASPAIDTLP SLDPAAFAAI PHAAAADAAP TRQRSQQQQQ QLSNKSGCSS TSETSKGSDK  180
EVTVASAPAQ AASFTELLIA GVAASSAGGG AIGNGADCVG IAHPGKGGAE GASTYGFSAA  240
SSFGDAPPIG MVPAPPFNFS APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG  300
ANRGTLQSNS PSNMSGHHHH HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL  360
QLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2676130155Putative transcription factor PCF6
5zkt_B9e-2676130155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.11e-180transcription factor PCF6
SwissprotQ10CE80.0PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A0D9ZE290.0A0A0D9ZE29_9ORYZ; Uncharacterized protein
STRINGOGLUM03G36280.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2