PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G36620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 181aa    MW: 19294.6 Da    PI: 8.2969
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G36620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-37221221101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n +++l++lp +er +a++s++ eA  r++dPvyG++gvi++lq+q++ ++ el
  OGLUM03G36620.1  22 RCAACKFLRRRCSRDCVLAPHFPASDPHRYACVQRVFGAGNTTRMLQQLPAQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQNQIRAAQCEL 115
                      6********************************************************************************************* PP

           DUF260  95 allkeel 101
                      a +++++
  OGLUM03G36620.1 116 AWTHAQI 122
                      **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.13121122IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-3622118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSPGEDDVEA SSDSGGSAII RRCAACKFLR RRCSRDCVLA PHFPASDPHR YACVQRVFGA  60
GNTTRMLQQL PAQERGRAAD SMAAEAYRRV QDPVYGCAGV INRLQNQIRA AQCELAWTHA  120
QIAMHSAAAA AHARTTPPPR ATLPPGQRDG GGVAGAPSST QQATTSAAWP LEDFASEFSF  180
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-322312612115LOB family transfactor Ramosa2.1
5ly0_B8e-322312612115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0870965e-96AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence.
GenBankAP0149595e-96AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126115e-96CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690105.14e-64PREDICTED: LOB domain-containing protein 24-like
SwissprotP594671e-41LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594688e-42LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0D9ZE771e-129A0A0D9ZE77_9ORYZ; Uncharacterized protein
STRINGOGLUM03G36620.11e-130(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.14e-44LOB domain-containing protein 24