PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G38110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 283aa    MW: 30609.7 Da    PI: 5.995
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G38110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.4e-10154180127
                      XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                      e+elkrerrkq+NRe+ArrsR+RK+++
  OGLUM03G38110.1 154 ERELKRERRKQSNRESARRSRLRKQER 180
                      89***********************97 PP
2bZIP_128.14.3e-092002372663
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +e+eeL +kv  L+a N++L+ el++lkk ++ +++e+
  OGLUM03G38110.1 200 QECEELSQKVTDLTAVNSTLRTELDKLKKDCEDMEAEN 237
                      89********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-16147235No hitNo description
PfamPF001701.3E-7154180IPR004827Basic-leucine zipper domain
SMARTSM003385.5E-16154239IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.62E-5158183No hitNo description
CDDcd147021.89E-14159230No hitNo description
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MQAYYAAAAA AAAAGGHPYA WPPPQSVPPM AGCAVPSAAA EGKSKRKTSG GPSGEDSSGS  60
GDGGSEDSSE RRDDADEKGL SPAKWRKLGH PDIEGETSQA AAMSEQNPVK AAPNLNIGMD  120
IWSNSTMVAM PSGQVEVNAG THLRRDKALS QMDERELKRE RRKQSNRESA RRSRLRKQER  180
PTSFCHPPNY PVTFYGLTNQ ECEELSQKVT DLTAVNSTLR TELDKLKKDC EDMEAENSQL  240
MDEMVQSEGS SVIATLSIKI DTSKDRHGSS SQLNKHTNDD SKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176RRSRLRK
2170177RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022501e-133AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879816.11e-154DNA-binding protein EMBP-1 isoform X5
SwissprotP250327e-40EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A0D9ZES80.0A0A0D9ZES8_9ORYZ; Uncharacterized protein
STRINGOGLUM03G38110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.21e-26G-box binding factor 1