PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G38910.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 256aa    MW: 26472.6 Da    PI: 8.3258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G38910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  OGLUM03G38910.1 100 HECHICGQGFEMGQALGGHMRRH 122
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-104569IPR007087Zinc finger, C2H2
SMARTSM003550.514567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.05E-64567No hitNo description
PROSITE profilePS501579.6814572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-695122No hitNo description
PfamPF139121.7E-1099125IPR007087Zinc finger, C2H2
SMARTSM003550.23100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTKHPRDGEV ISLSLSLTLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL  60
GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAATH ECHICGQGFE MGQALGGHMR  120
RHREEAAAAA AAVHAPPVLL ELFGRPLATE HRPRQGGCRG KIAIEVIESR SGGGHRAGPN  180
LEVFELGHVR SGIGATALAV TEESDTRGLG IDGASSCEAL EGGCEADHWS LGRGADGEGE  240
KRAGAGEAED KGIRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044330.0AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK1196900.0AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864730.0AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds.
GenBankAY3058640.0AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8331400.0CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence.
GenBankEU2808990.0EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial.
GenBankHQ8588460.0HQ858846.1 Oryza sativa Japonica Group isolate UT1603 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629272.12e-96zinc finger protein ZAT12
TrEMBLA0A0D9ZF191e-179A0A0D9ZF19_9ORYZ; Uncharacterized protein
STRINGOGLUM03G38910.11e-180(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-14C2H2 family protein