PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G38970.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 416aa MW: 41276.6 Da PI: 9.2488

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G38970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	116	176	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ OGLUM03G38970.1 116 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 176 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-39	100	174	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	120	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MVFSSVPAVY LDPPNWNQQQ QQAHHGQLPS GGNGGGGGGG GGGVDAHHHH HHHHQLPPMP 60 PHHGGLMAPR PDMVAAALAA SGGGGGGGGG GGPTGGTAVR PGSMTERARL AKIPQPEPGL 120 KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR RNKRTKSSKS 180 SSSTSAAGSA SATGGTSSST SSTATGGSSS AAAAAAMMPP QAQLPFLASL HHPLGGGDHY 240 SSGASRLGFP GLSSLDPVDY QLGGAAAAAA AIGLEQWRLP QIQQFPFLSR NDAMPPPMSG 300 IYPFDAEAAA DAAGFAGQLL AGTKVPGSSG LITQLASVKM EDSNAQSAAM NSSPREFLGL 360 PGNLQFWGGG NGAGPGGNGD GATGGSGAGV APGGGGGGGG WADLSGFNSS SSGNIL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MVFSSVPAVY LDPPNWNQQQ QQAHHGQLPS GGNGGGGGGG GGGVDAHHHH HHHHQLPPMP  60
PHHGGLMAPR PDMVAAALAA SGGGGGGGGG GGPTGGTAVR PGSMTERARL AKIPQPEPGL  120
KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR RNKRTKSSKS  180
SSSTSAAGSA SATGGTSSST SSTATGGSSS AAAAAAMMPP QAQLPFLASL HHPLGGGDHY  240
SSGASRLGFP GLSSLDPVDY QLGGAAAAAA AIGLEQWRLP QIQQFPFLSR NDAMPPPMSG  300
IYPFDAEAAA DAAGFAGQLL AGTKVPGSSG LITQLASVKM EDSNAQSAAM NSSPREFLGL  360
PGNLQFWGGG NGAGPGGNGD GATGGSGAGV APGGGGGGGG WADLSGFNSS SSGNIL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104433	0.0	AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628807.1	1e-170	dof zinc finger protein DOF2.4 isoform X2
TrEMBL	A0A0D9ZF28	0.0	A0A0D9ZF28_9ORYZ; Uncharacterized protein
STRING	OGLUM03G38970.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-43	Dof family protein