PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40250.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1397aa    MW: 155083 Da    PI: 5.548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40250.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-0812471288144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                       r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  OGLUM03G40250.3 1247 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1288
                       569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.583640IPR002885Pentatricopeptide repeat
PfamPF015356.0E-4933IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-4933IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.4154175IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-686137IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.512107141IPR002885Pentatricopeptide repeat
PfamPF015355.1E-6109139IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0019109142IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.777142177IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-6207265IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.744210240IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.487244278IPR002885Pentatricopeptide repeat
SuperFamilySSF466897.4E-1012381294IPR009057Homeodomain-like
PfamPF159636.7E-2512401321No hitNo description
SMARTSM007177.5E-912461294IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-512471289IPR009057Homeodomain-like
CDDcd001672.17E-612491289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1397 aa     Download sequence    Send to blast
MTLKEDVFIW TSMITAFVQN EHFEKALYLF RELLYTRKET DQFTISSVMS ACAALSVPTT  60
CKQIHCHAVK TGLDQFTVSG NSQIAMYRNI GDLKASKLTF EQISCLDTFS WSAMILSYAV  120
HGYESKALEL FEKMKNLGVM MNEIASLAVL IACSHQGLAD EGLRYYENTI PDDGFSLDVK  180
LKACMVDLLG RVGKIADAED FIMSSGSEND PILWHALLRA CRVHGDKERC TKIGEKLMEL  240
EPFSASSYVM LYNLYMDAGK ISLAMRTRGL MRERGITNEA GISWTDFGGS IHNFIDGDNS  300
CSHNTIHTTL EELLVRVKQK TEHGGTNIWE LEFQSRKLSE SSISRHGELL AVAFGLTTLP  360
SVAPVRVMKN QRISWESHET LKLLSEALIP GRLLPFRLPP LPLPPSPTRS IGKSNASIAF  420
LFFSSRSPPQ TPPIPYPPHT LSVAPPQPPP HPLQRRRSTG LPSIDGVTPR DGWRRRGRAD  480
APRRRSPVGA VAASLHRRPD ESLAPPPIPG LLDPACEQVR NGLFGNPKIC RLGSSSPCAV  540
SRLNRGGGKQ SRGGEGILQL NPHVPSWIRP CLKGVDKLDE SSGDTGHIAM IDDEADFGNI  600
TDATEGQAAA KFHGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV FASVHKVSQN  660
EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE EERVAKFQPK  720
FRVKTSKAAS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTR HQESVQISYS  780
QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE TIDAACVATP  840
EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA TVDLDSHAEM  900
VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP TDTNSETSNS  960
SHFCKDIATG ESLSNLPQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY DHVIEQEPER  1020
DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE YTARGKQKGR  1080
RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK DSSVEQPEKK  1140
LTHRIRRKRM EEVKTLLETP DHEIDRMKLS VTHLRLLQEA KERIKASFVG KEIPSGPSSS  1200
NHSTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW SKSETDKFYE  1260
GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSRDN LYFKEVIKKL  1320
NIEDVQPDIN NTHEQEGTSN EEDPGNKNIP GGLINEEENG LDWSDKELDM HRSEVEEKEH  1380
VSTNDDDDDL GDVFDWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D9e-20423917332PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0D9ZFK90.0A0A0D9ZFK9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G40250.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-35MYB_related family protein