PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G40270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 243aa    MW: 26036.3 Da    PI: 8.4692
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G40270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS835e-261120241369
             GRAS 241 vveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                      ++eqea+hn++ + e+f+eal+yy+alfd+l  a +   +++r  v ++  g +      ++g +rrerhe+le+W   le aGF+ vpls++a
  OGLUM03G40270.1   1 MTEQEASHNAAGLTEQFVEALNYYAALFDCLrGARV-GGAHARGAVAAQG-GDQ-----EHRGVRRRERHERLERW---LEGAGFGRVPLSYYA 84 
                      68*****************************66666.5556666666662.333.....58999************...789************ PP

             GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                        qa+++ +  + dg+++ ee+g ++l+W+dr+L+s
  OGLUM03G40270.1  85 LLQARRVAQGLGCDGFKIREEKGNFFLCWQDRALFS 120
                      **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.7131105IPR005202Transcription factor GRAS
PfamPF035141.7E-231120IPR005202Transcription factor GRAS
PfamPF044188.1E-32149220IPR007512Protein of unknown function DUF543
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTEQEASHNA AGLTEQFVEA LNYYAALFDC LRGARVGGAH ARGAVAAQGG DQEHRGVRRR  60
ERHERLERWL EGAGFGRVPL SYYALLQARR VAQGLGCDGF KIREEKGNFF LCWQDRALFS  120
SPENAAPAAA PAPAPAPTPA PPPPPSSPPT KSGIPPRYDL DAKWDACLDL SIRRVAYSTL  180
GGTFAGLLLF RSPTTRWASV ALGAGVGIGA AYTECSYLFN GAPPKWSPKV STVPSAHSEG  240
EDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413330.0AK241333.1 Oryza sativa Japonica Group cDNA, clone: J065144I22, full insert sequence.
GenBankAK2434540.0AK243454.1 Oryza sativa Japonica Group cDNA, clone: J100070J19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628057.16e-81protein SPIRAL1-like 1
TrEMBLA0A0D9ZFL21e-176A0A0D9ZFL2_9ORYZ; Uncharacterized protein
STRINGOGLUM03G40270.11e-177(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-21scarecrow-like 3