PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G00550.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 227aa    MW: 24037.2 Da    PI: 7.6732
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G00550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY40.78.4e-131461822359
            YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaa 59 
                       vsvPs+slfk+vtvrCGhC++ll vn+      ++a
  OGLUM04G00550.1 146 EVSVPSSSLFKTVTVRCGHCSNLLPVNIGGLLLPTSA 182
                      69*************************9887665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-11145182IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVDPTSRMRI RPARDGPHCG GHRRLRRQRS WAAASEEEHP SSRSDEQSEE ADEDGDGNAE  60
AVGAAVLLFS PPPPAVAAAT LLLFPSSDEA AAAWEKPRRP SPVAWNLLLQ FIKAGFYAKA  120
SPSFPEFPPN KEVPFQKGCS GHKQVEVSVP SSSLFKTVTV RCGHCSNLLP VNIGGLLLPT  180
SAAATVATAP PPPSPPPPPP AAHFPHSLNL APPANPPHHH SLLVLAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668361e-163AK066836.1 Oryza sativa Japonica Group cDNA clone:J013088I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZGE91e-160A0A0D9ZGE9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G00550.11e-161(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1893434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.13e-10YABBY family protein